Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2784 Fragaria x ananassa HOM05D021789 ORTHO05D009073 1.0e-207 726.5 359 100.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-100 370.5 228 78.5
FAN22G1852 Fragaria x ananassa HOM05D021789 ORTHO05D025345 9.2e-100 367.9 205 85.9
FvH4_4g30181 Fragaria vesca HOM05D021789 ORTHO05D025345 6.2e-88 328.6 198 79.3
FAN12G1824 Fragaria x ananassa HOM05D021789 ORTHO05D025345 8.0e-88 328.2 198 79.3
FvH4_4g30190 Fragaria vesca HOM05D021789 ORTHO05D025345 6.0e-67 258.8 157 83.4
FvH4_7g33810 Fragaria vesca HOM05D000007 ORTHO05D009073 2.4e-47 193.7 189 52.9
FAN01G1574 Fragaria x ananassa HOM05D000007 ORTHO05D009073 1.5e-46 191.0 189 52.4
FAN12G0684 Fragaria x ananassa HOM05D021789 ORTHO05D025345 1.6e-43 181.0 129 73.6
RcHm_v2.0_Chr2g0138411 Rosa chinensis HOM05D000007 ORTHO05D022672 1.0e-29 135.2 172 42.4
MD03G1110700 Malus domestica HOM05D000007 ORTHO05D009073 7.2e-28 129.0 205 41.0
RcHm_v2.0_Chr4g0436521 Rosa chinensis HOM05D009792 ORTHO05D009073 5.7e-25 119.4 170 40.0
MD11G1124100 Malus domestica HOM05D000007 ORTHO05D009073 9.7e-25 118.6 184 39.7
FvH4_4g28520 Fragaria vesca HOM05D009792 ORTHO05D009073 3.7e-24 116.7 201 34.8
Prupe.6G093100 Prunus persica HOM05D000007 ORTHO05D009073 3.7e-24 116.7 203 36.5
FAN12G2506 Fragaria x ananassa HOM05D009792 ORTHO05D009073 4.8e-24 116.3 201 34.8
MD11G1124200 Malus domestica HOM05D000007 ORTHO05D009073 8.2e-24 115.5 197 35.5
FAN22G0536 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.1e-23 115.2 200 38.0
FAN16G0179 Fragaria x ananassa HOM05D000007 ORTHO05D009073 1.8e-23 114.4 214 34.6
FAN28G0070 Fragaria x ananassa HOM05D009792 ORTHO05D009073 4.5e-22 109.8 193 39.9
FAN26G0358 Fragaria x ananassa HOM05D000091 ORTHO05D022672 5.9e-22 109.4 203 36.9
FAN26G1355 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.7e-21 107.8 170 38.8
MD11G1124500 Malus domestica HOM05D009792 ORTHO05D009073 3.8e-21 106.7 165 38.2
FvH4_1g24080 Fragaria vesca HOM05D000091 ORTHO05D022672 6.5e-21 105.9 176 36.4
RcHm_v2.0_Chr4g0399251 Rosa chinensis HOM05D000007 ORTHO05D009073 4.2e-20 103.2 184 38.0
MD02G1067600 Malus domestica HOM05D009792 ORTHO05D009073 1.2e-19 101.7 196 37.2
FvH4_4g34271 Fragaria vesca HOM05D000007 ORTHO05D009073 3.6e-19 100.1 191 34.0
Prupe.1G285300 Prunus persica HOM05D000007 ORTHO05D009073 3.6e-19 100.1 196 38.8
Prupe.1G333100 Prunus persica HOM05D000007 ORTHO05D009073 7.9e-19 99.0 192 34.9
Actinidia30171 Actinidia chinensis HOM05D000007 ORTHO05D009073 4.4e-17 93.2 198 33.3
QL03p066111 Quercus lobata HOM05D009398 ORTHO05D011511 7.4e-17 92.4 140 33.6
FAN07G0854 Fragaria x ananassa HOM05D009792 ORTHO05D035474 9.7e-17 92.0 89 49.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.3e-16 91.7 214 31.8
FAN07G2491 Fragaria x ananassa HOM05D000007 ORTHO05D009073 3.7e-16 90.1 188 33.5
MD16G1019000 Malus domestica HOM05D000007 ORTHO05D009073 3.7e-16 90.1 188 31.4
FvH4_4g07100 Fragaria vesca HOM05D000007 ORTHO05D009073 8.2e-16 89.0 185 31.9
FAN07G2472 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.4e-15 88.2 218 31.2
MBI19_g26733_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 1.4e-15 88.2 194 29.4
MBI19_g26732_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 7.0e-15 85.9 218 29.4
MD13G1020600 Malus domestica HOM05D000007 ORTHO05D009073 9.1e-15 85.5 183 31.7
QL03p068470 Quercus lobata HOM05D009398 ORTHO05D011511 1.2e-14 85.1 109 41.3
FAN22G0060 Fragaria x ananassa HOM05D000007 ORTHO05D009073 1.5e-14 84.7 184 31.5
QL03p062572 Quercus lobata HOM05D009398 ORTHO05D011511 4.5e-14 83.2 112 36.6
FAN19G0099 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.3e-13 81.6 147 40.8
QL03p068339 Quercus lobata HOM05D009398 ORTHO05D011511 2.9e-13 80.5 175 34.9
Prupe.1G285500 Prunus persica HOM05D000007 ORTHO05D009073 2.5e-12 77.4 203 31.5
QL03p062618 Quercus lobata HOM05D009398 ORTHO05D009073 2.5e-12 77.4 214 32.7
Cfa008807 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.2e-12 76.6 190 26.8
Dinv16557 Davidia involucrata HOM05D000007 ORTHO05D009073 4.2e-12 76.6 165 31.5
Haze_11821 Corylus avellana HOM05D009398 ORTHO05D011511 5.5e-12 76.3 187 27.3
HanXRQChr04g0095931 Helianthus annuus HOM05D000171 ORTHO05D009073 5.5e-12 76.3 180 27.2
Prupe.1G300900 Prunus persica HOM05D015152 ORTHO05D009073 7.2e-12 75.9 191 29.8
FAN19G0184 Fragaria x ananassa HOM05D000091 ORTHO05D022672 9.4e-12 75.5 86 44.2
Ciclev10011253m.g Citrus clementina HOM05D000257 ORTHO05D009735 1.2e-11 75.1 145 31.0
CSS0037710 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D009073 2.7e-11 73.9 167 26.3
HanXRQChr04g0095821 Helianthus annuus HOM05D000171 ORTHO05D009073 3.6e-11 73.6 180 26.7
DCAR_016817 Daucus carota HOM05D000007 ORTHO05D003666 4.7e-11 73.2 162 29.0
HanXRQChr05g0146491 Helianthus annuus HOM05D000171 ORTHO05D009073 4.7e-11 73.2 183 25.7
MBI05_g07862_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D000676 8.0e-11 72.4 205 27.8
Sabra15G0099300 Salix brachista HOM05D000171 ORTHO05D000101 8.0e-11 72.4 183 27.9
CSS0045215 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D009073 1.4e-10 71.6 165 27.3
CSS0046872 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D009073 1.4e-10 71.6 175 30.3
Duzib150G0415 Durio zibethinus HOM05D009398 ORTHO05D009073 1.8e-10 71.2 212 27.8
HanXRQChr02g0048031 Helianthus annuus HOM05D000171 ORTHO05D009073 1.8e-10 71.2 119 34.5
Haze_12327 Corylus avellana HOM05D009398 ORTHO05D011511 2.3e-10 70.9 208 27.4
Sabra08G0109000 Salix brachista HOM05D000171 ORTHO05D000101 2.3e-10 70.9 183 27.9
HanXRQChr07g0189371 Helianthus annuus HOM05D000171 ORTHO05D009073 3.0e-10 70.5 173 31.8
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.9e-10 70.1 185 31.9
TAR371G0593 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.9e-10 70.1 184 32.1
Carub.0003s0567 Capsella rubella HOM05D000007 ORTHO05D000017 5.2e-10 69.7 178 28.7
HanXRQChr05g0146361 Helianthus annuus HOM05D000171 ORTHO05D009073 5.2e-10 69.7 183 27.9
CSS0043495 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D000101 6.7e-10 69.3 177 29.9
FAN23G1066 Fragaria x ananassa HOM05D009792 ORTHO05D009073 6.7e-10 69.3 90 40.0
PGSC0003DMG400001445 Solanum tuberosum HOM05D000171 ORTHO05D000101 6.7e-10 69.3 168 29.8
Potri.008G144000 Populus trichocarpa HOM05D000171 ORTHO05D010908 8.8e-10 68.9 183 27.9
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.1e-09 68.6 165 30.3
HanXRQChr05g0146471 Helianthus annuus HOM05D000171 ORTHO05D000101 1.5e-09 68.2 102 32.4
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.5e-09 68.2 165 29.7
Rhsim08G0197100 Rhododendron simsii HOM05D000171 ORTHO05D000101 2.0e-09 67.8 166 30.7
Hma1.2p1_1532F.1_g289300 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.6e-09 67.4 248 25.8
FAN17G2685 Fragaria x ananassa HOM05D009792 ORTHO05D009073 3.3e-09 67.0 108 33.3
Atru.chr9.1609 Acer truncatum HOM05D003981 ORTHO05D003666 4.4e-09 66.6 154 29.9
Aqoxy5G01432 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 4.4e-09 66.6 105 34.3
CARHR080760 Cardamine hirsuta HOM05D000007 ORTHO05D000017 4.4e-09 66.6 193 29.0
HanXRQChr02g0047271 Helianthus annuus HOM05D000171 ORTHO05D009073 4.4e-09 66.6 157 29.9
Hma1.2p1_2053F.1_g312720 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 5.7e-09 66.2 248 25.8
Dinv16550 Davidia involucrata HOM05D000171 ORTHO05D000101 7.4e-09 65.9 180 30.0
Dinv16551 Davidia involucrata HOM05D000171 ORTHO05D000101 7.4e-09 65.9 180 29.4
BcaB04g21352 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-08 65.1 189 24.9
FAN17G1591 Fragaria x ananassa HOM05D009792 ORTHO05D000676 1.3e-08 65.1 127 35.4
HanXRQChr02g0049881 Helianthus annuus HOM05D000007 ORTHO05D009073 1.3e-08 65.1 115 33.9
Prupe.1G283900 Prunus persica HOM05D003015 ORTHO05D009073 1.3e-08 65.1 133 37.6
FvH4_4g34281 Fragaria vesca HOM05D000691 ORTHO05D000378 1.7e-08 64.7 213 28.6
MBI14_g41393_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 1.7e-08 64.7 162 30.2
CARHR029830 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.2e-08 64.3 186 26.3
ECA246G2528 Erigeron canadensis HOM05D000007 ORTHO05D009073 2.2e-08 64.3 184 25.0
PSO210G5713 Papaver somniferum HOM05D004049 ORTHO05D004496 2.2e-08 64.3 166 30.7
TAR371G1227 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.2e-08 64.3 89 39.3
Atru.chr3.3109 Acer truncatum HOM05D000007 ORTHO05D000521 2.8e-08 63.9 183 26.8
Prupe.1G300600 Prunus persica HOM05D000007 ORTHO05D009073 2.8e-08 63.9 178 30.9
Rhsim08G0210600 Rhododendron simsii HOM05D000171 ORTHO05D000101 2.8e-08 63.9 154 28.6
Rhsim04G0093700 Rhododendron simsii HOM05D000007 ORTHO05D009073 3.7e-08 63.5 202 28.2
HanXRQChr02g0058161 Helianthus annuus HOM05D000007 ORTHO05D000017 4.8e-08 63.2 167 29.9
HanXRQChr05g0144641 Helianthus annuus HOM05D000007 ORTHO05D009073 4.8e-08 63.2 166 29.5
Sabra16G0310700 Salix brachista HOM05D000007 ORTHO05D000101 4.8e-08 63.2 180 27.8
Hma1.2p1_1532F.1_g289320 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 6.3e-08 62.8 194 25.3
Lj8C594T5 Lonicera japonica HOM05D000007 ORTHO05D000521 6.3e-08 62.8 185 24.9
Rhsim04G0086800 Rhododendron simsii HOM05D000171 ORTHO05D000101 6.3e-08 62.8 201 29.4
AT3G06240 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 8.2e-08 62.4 152 27.6
QL03p068360 Quercus lobata HOM05D037156 ORTHO05D011511 8.2e-08 62.4 184 26.6
RhsimUnG0048800 Rhododendron simsii HOM05D000171 ORTHO05D000101 8.2e-08 62.4 197 28.9
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 8.2e-08 62.4 192 28.6
TAR371G0023 Trochodendron aralioides HOM05D000007 ORTHO05D022563 1.1e-07 62.0 128 31.2
DCAR_011586 Daucus carota HOM05D000007 ORTHO05D009073 1.4e-07 61.6 199 27.1
Manes.11G003000 Manihot esculenta HOM05D000171 ORTHO05D000101 1.4e-07 61.6 162 27.8
Prupe.1G147100 Prunus persica HOM05D000007 ORTHO05D000521 1.4e-07 61.6 178 27.5
TWI59G1434 Tripterygium wilfordii HOM05D003981 ORTHO05D003666 1.4e-07 61.6 173 28.3
FAN22G1157 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.8e-07 61.2 173 28.3
HanXRQChr02g0047431 Helianthus annuus HOM05D000171 ORTHO05D009073 1.8e-07 61.2 181 28.2
HanXRQChr02g0047451 Helianthus annuus HOM05D000171 ORTHO05D009073 1.8e-07 61.2 181 28.2
HanXRQChr05g0156341 Helianthus annuus HOM05D000171 ORTHO05D009073 2.4e-07 60.8 105 32.4
PSO063G0135 Papaver somniferum HOM05D000007 ORTHO05D000017 2.4e-07 60.8 140 27.9
Rhsim05G0205500 Rhododendron simsii HOM05D008437 ORTHO05D010577 2.4e-07 60.8 188 27.7
Sp3g05160 Schrenkiella parvula HOM05D000007 ORTHO05D000017 2.4e-07 60.8 143 30.1
Aa31LG5G16750 Aethionema arabicum HOM05D000007 ORTHO05D000017 3.1e-07 60.5 156 30.1
HanXRQChr02g0047481 Helianthus annuus HOM05D000007 ORTHO05D009073 3.1e-07 60.5 188 28.2
Oeu056889.1 Olea europaea HOM05D000007 ORTHO05D007252 3.1e-07 60.5 184 26.6
Rhsim03G0071300 Rhododendron simsii HOM05D000171 ORTHO05D004496 3.1e-07 60.5 174 29.3
Rhsim03G0071900 Rhododendron simsii HOM05D000007 ORTHO05D009073 3.1e-07 60.5 182 27.5
Rhsim11G0091600 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.1e-07 60.5 133 27.1
ClCG01G007450 Citrullus lanatus HOM05D000171 ORTHO05D009073 4.1e-07 60.1 168 28.6
Ciclev10030174m.g Citrus clementina HOM05D000007 ORTHO05D000017 4.1e-07 60.1 159 28.3
HanXRQChr05g0137821 Helianthus annuus HOM05D000171 ORTHO05D009073 4.1e-07 60.1 101 32.7
Lj3P146T20 Lonicera japonica HOM05D008999 ORTHO05D010908 4.1e-07 60.1 134 29.9
PSO339G2850 Papaver somniferum HOM05D000007 ORTHO05D000017 4.1e-07 60.1 154 27.9
CAN.G222.120 Capsicum annuum HOM05D000007 ORTHO05D000521 5.3e-07 59.7 211 24.2
Eucgr.K00668 Eucalyptus grandis HOM05D000007 ORTHO05D000521 5.3e-07 59.7 168 26.2
Nn8g40107 Nelumbo nucifera HOM05D000007 ORTHO05D000017 5.3e-07 59.7 177 25.4
Nn8g40111 Nelumbo nucifera HOM05D000007 ORTHO05D000017 5.3e-07 59.7 156 26.3
PSO729G0285 Papaver somniferum HOM05D000007 ORTHO05D000017 5.3e-07 59.7 171 29.2
Thhalv10020779m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 7.0e-07 59.3 186 29.0
HanXRQChr16g0511581 Helianthus annuus HOM05D000171 ORTHO05D009073 7.0e-07 59.3 209 26.3
Lj3P150T21 Lonicera japonica HOM05D008999 ORTHO05D010908 7.0e-07 59.3 207 22.7
Prupe.1G285200 Prunus persica HOM05D015152 ORTHO05D009073 7.0e-07 59.3 76 42.1
Rhsim12G0109800 Rhododendron simsii HOM05D009398 ORTHO05D011511 7.0e-07 59.3 124 30.6
TAR374G0955 Trochodendron aralioides HOM05D013022 ORTHO05D007252 7.0e-07 59.3 145 28.3
ECA233G2949 Erigeron canadensis HOM05D000352 ORTHO05D000260 9.1e-07 58.9 193 26.4
PSO675G5564 Papaver somniferum HOM05D000007 ORTHO05D000017 9.1e-07 58.9 154 24.7
Ciclev10006577m.g Citrus clementina HOM05D003981 ORTHO05D003666 1.2e-06 58.5 190 27.9
ECA232G4304 Erigeron canadensis HOM05D000171 ORTHO05D009073 1.6e-06 58.2 185 27.0
Glyma.10G132100 Glycine max HOM05D000007 ORTHO05D000017 1.6e-06 58.2 174 23.6
PSO675G6470 Papaver somniferum HOM05D004049 ORTHO05D004496 1.6e-06 58.2 198 27.8
TAR371G1225 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.6e-06 58.2 145 29.7
Atru.chr3.3207 Acer truncatum HOM05D000007 ORTHO05D000017 2.0e-06 57.8 146 30.8
Aqoxy6G02927 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 2.0e-06 57.8 252 23.8
Cpa.g.sc136.5 Carica papaya HOM05D000007 ORTHO05D000521 2.0e-06 57.8 111 29.7
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 2.0e-06 57.8 166 33.1
MBI14_g33670_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 2.6e-06 57.4 166 25.3
PSO017G3977 Papaver somniferum HOM05D000007 ORTHO05D000676 2.6e-06 57.4 179 27.9
QL03p065997 Quercus lobata HOM05D009398 ORTHO05D011511 2.6e-06 57.4 115 30.4
QL03p066121 Quercus lobata HOM05D009398 ORTHO05D011511 2.6e-06 57.4 115 30.4
BolC8t50065H Brassica oleracea HOM05D000171 ORTHO05D000101 3.5e-06 57.0 139 24.5
DCAR_030528 Daucus carota HOM05D002200 ORTHO05D002294 3.5e-06 57.0 196 25.0
FvH4_4g07091 Fragaria vesca HOM05D024456 ORTHO05D009073 3.5e-06 57.0 180 30.0
PSO541G0121 Papaver somniferum HOM05D000007 ORTHO05D000017 3.5e-06 57.0 154 25.3
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.5e-06 57.0 155 25.8
Cfa008760 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.5e-06 56.6 138 32.6
Cfa009419 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.5e-06 56.6 121 34.7
FvH4_1g12771 Fragaria vesca HOM05D000007 ORTHO05D009073 4.5e-06 56.6 101 41.6
Peaxi162Scf00141g00118 Petunia axillaris HOM05D008437 ORTHO05D010577 4.5e-06 56.6 158 27.8
THA.LOC104818825 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 4.5e-06 56.6 147 27.9
MSTRG.5952 Avicennia marina HOM05D000007 ORTHO05D007252 5.9e-06 56.2 87 32.2
BcaB02g10631 Brassica carinata HOM05D000171 ORTHO05D000101 5.9e-06 56.2 174 23.6
Haze_05545 Corylus avellana HOM05D000007 ORTHO05D000017 5.9e-06 56.2 145 28.3
Hma1.2p1_0405F.1_g145690 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 5.9e-06 56.2 185 22.7
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 5.9e-06 56.2 166 28.3
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 7.7e-06 55.8 199 24.6
CSS0024916 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.7e-06 55.8 174 25.3
CSS0047157 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D010908 7.7e-06 55.8 164 28.7
HanXRQChr05g0147631 Helianthus annuus HOM05D000007 ORTHO05D009073 7.7e-06 55.8 100 31.0
Lj6A666T52 Lonicera japonica HOM05D000007 ORTHO05D000017 7.7e-06 55.8 113 26.5
Oeu007964.1 Olea europaea HOM05D000171 ORTHO05D016184 7.7e-06 55.8 193 23.3
Rhsim11G0156800 Rhododendron simsii HOM05D000007 ORTHO05D000521 7.7e-06 55.8 185 28.1
Rhsim11G0158400 Rhododendron simsii HOM05D000007 ORTHO05D000521 7.7e-06 55.8 185 28.1
Thecc.01G185500 Theobroma cacao HOM05D000007 ORTHO05D000521 7.7e-06 55.8 181 26.5


User provided reference genes

Program Settings