Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2285.8 1187 100.0
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2188.3 1186 95.0
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2178.3 1186 95.1
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 2171.7 1186 95.2
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 2100.1 1187 90.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 2099.7 1187 90.9
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1727.6 1188 75.0
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1682.5 1207 71.9
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1433.3 1152 64.8
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1406.3 1265 59.2
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1389.0 1189 61.7
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1370.9 1151 60.3
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1354.0 1155 60.7
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1345.1 1153 61.1
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1339.3 1148 59.1
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1334.3 1150 60.2
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1323.1 1158 59.0
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1323.1 1151 58.6
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1318.9 1157 59.4
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1306.2 1151 58.0
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1302.0 1151 58.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1262.3 1156 57.4
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1243.0 1191 55.7
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1241.1 1152 56.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1238.0 1150 56.9
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1234.6 1151 56.6
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1229.2 1165 56.1
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1222.6 1141 56.4
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1222.6 1155 56.0
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1219.9 1161 56.5
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1216.8 1156 56.0
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1211.4 1159 54.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1204.9 1153 55.7
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1204.5 1161 55.7
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1198.0 1159 53.4
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1196.0 1152 54.9
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1195.6 1168 54.6
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1195.6 1154 56.1
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1191.8 1150 54.6
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1179.9 1191 52.6
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1177.9 1205 53.5
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 0.0e+00 1174.5 893 66.5
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1172.1 1145 54.1
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1168.3 1159 52.3
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1166.8 1022 58.5
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1161.7 1168 52.7
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1159.1 983 59.9
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1157.1 923 63.3
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1151.0 1007 58.7
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1146.7 1156 52.7
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1146.3 1128 53.8
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1143.6 1188 52.9
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1141.3 1193 51.4
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1129.0 1152 52.0
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1125.2 1163 51.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1124.8 1161 51.9
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1124.4 1157 51.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1123.2 1157 52.5
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1120.5 1162 50.9
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1120.1 1161 51.8
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1119.8 1193 50.4
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1118.2 1023 56.4
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1113.2 1194 50.2
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1112.1 1156 50.9
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1101.7 1160 50.6
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1095.5 1154 50.4
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1092.0 1160 50.5
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1092.0 1160 50.5
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1090.9 1161 50.4
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1083.2 1052 55.1
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1083.2 1154 50.4
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1078.9 1154 50.5
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1075.8 1208 48.5
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.4e-306 1054.7 1162 50.2
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.3e-304 1050.0 993 57.2
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 3.3e-303 1045.4 1023 54.3
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.2e-294 1016.9 1194 47.5
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.3e-291 1004.2 1159 47.6
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 3.5e-289 998.8 1163 47.1
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 2.5e-287 992.6 1156 49.6
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 2.8e-286 989.2 1132 48.1
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.4e-282 974.9 1076 49.3
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.5e-281 972.2 992 52.3
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.2e-278 963.8 1116 47.8
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 6.7e-248 861.7 742 60.2
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.9e-243 846.3 1027 45.4
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.9e-240 835.9 1087 44.4
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 2.9e-227 793.1 930 46.8
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 4.7e-225 785.8 1033 43.5
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 1.0e-219 768.1 625 62.7
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 4.1e-213 746.1 1030 41.8
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.8e-211 739.6 789 49.6
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 6.8e-200 702.2 1204 37.5
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 5.7e-199 699.1 739 51.0
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 9.8e-199 698.4 885 42.9
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.3e-198 698.0 631 58.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 9.2e-189 665.2 654 52.8
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 2.2e-174 617.5 590 55.8
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 1.5e-170 604.7 462 66.0
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 4.9e-166 589.7 644 49.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 5.3e-160 569.7 505 58.8
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 4.5e-135 486.9 394 64.2
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 9.3e-133 479.2 470 56.0
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.3e-123 448.0 586 45.2
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.1e-112 412.5 521 45.5
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 8.8e-107 392.9 583 44.8
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 8.2e-105 386.3 479 44.3
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 8.0e-100 369.8 1214 27.8
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.3e-86 325.9 1168 26.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.5e-74 285.8 381 43.3
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 3.1e-59 235.0 228 51.8
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.7e-52 211.1 250 42.4
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 5.4e-48 197.6 173 57.8
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 1.9e-45 189.1 252 42.9
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 9.0e-43 180.3 326 39.0
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.7e-41 176.0 194 49.5
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.9e-40 172.6 134 61.9
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 6.6e-38 164.1 161 51.6
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.8e-35 156.0 134 58.2
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 5.4e-32 144.4 136 58.1
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.5e-29 135.6 116 62.1
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 1.1e-27 130.2 107 57.9
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 7.1e-24 117.5 88 65.9
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.5e-18 99.8 483 22.6
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 8.4e-17 94.0 65 72.3
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.8e-14 86.3 111 45.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 4.1e-11 75.1 59 62.7
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 3.2e-08 65.5 83 42.2


User provided reference genes

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