Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.6e-231 805.1 416 100.0
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 2.0e-199 699.1 416 89.4
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.5e-198 694.1 416 88.9
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.0e-178 629.4 417 82.5
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.4e-155 553.5 419 71.6
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.2e-153 546.2 418 71.8
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 4.4e-138 495.4 426 62.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 4.9e-137 491.9 422 64.5
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 6.4e-137 491.5 425 64.0
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 3.2e-136 489.2 422 64.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 9.2e-136 487.6 416 63.7
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.7e-135 486.1 419 63.5
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.1e-133 480.7 417 64.3
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 6.2e-132 474.9 420 61.9
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.3e-131 473.0 330 80.0
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.2e-130 470.7 404 63.1
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.6e-130 469.5 421 61.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 4.9e-129 465.3 435 60.2
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 8.3e-129 464.5 438 61.4
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.2e-128 462.6 420 61.0
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 9.2e-128 461.1 395 64.1
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.6e-127 460.3 408 61.5
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 6.0e-127 458.4 422 60.0
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 7.8e-127 458.0 422 60.2
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 7.8e-127 458.0 349 67.9
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.0e-126 457.6 421 60.3
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 6.6e-126 454.9 416 60.8
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 6.6e-126 454.9 368 65.5
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.5e-125 453.8 376 63.6
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.5e-125 453.0 413 60.0
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.3e-125 452.6 408 61.5
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.2e-124 450.7 287 85.4
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 8.1e-124 448.0 413 60.8
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.1e-123 447.6 418 60.0
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.3e-123 446.4 403 60.5
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 8.9e-123 444.5 376 62.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 2.0e-122 443.4 376 62.0
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.4e-122 442.6 368 64.1
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 4.4e-122 442.2 431 58.5
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 4.4e-122 442.2 406 60.3
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 7.6e-122 441.4 407 61.9
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.7e-121 440.3 410 57.1
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 2.9e-121 439.5 364 62.9
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 6.4e-121 438.3 338 68.0
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 8.4e-121 438.0 422 58.3
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.1e-120 437.6 416 58.9
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.4e-120 437.2 395 60.0
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.2e-119 434.1 385 61.0
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.2e-119 434.1 420 57.9
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 3.0e-118 429.5 390 57.9
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 2.5e-117 426.4 366 60.7
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.1e-116 423.3 398 58.0
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.8e-115 420.2 412 57.8
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 2.4e-115 419.9 366 60.1
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 4.0e-115 419.1 407 56.8
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 8.9e-115 417.9 418 54.8
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.5e-114 417.2 393 58.0
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.5e-114 417.2 366 59.8
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 3.4e-114 416.0 409 56.2
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 3.4e-114 416.0 407 56.5
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 4.4e-114 415.6 407 56.3
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 4.4e-114 415.6 407 56.3
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 9.9e-114 414.5 408 57.1
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 3.8e-113 412.5 403 56.8
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 8.4e-113 411.4 354 61.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.6e-111 407.1 408 55.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.6e-111 407.1 407 55.8
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.5e-109 400.6 359 58.8
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.3e-109 399.4 405 53.8
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 7.3e-109 398.3 402 56.5
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 9.6e-109 397.9 405 54.1
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 6.2e-108 395.2 405 53.8
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 8.1e-108 394.8 379 59.9
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 1.8e-107 393.7 388 56.2
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 1.2e-106 391.0 413 54.2
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.5e-106 390.6 408 52.5
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.6e-106 389.8 367 56.4
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.3e-105 387.5 392 56.1
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 3.8e-105 386.0 426 53.8
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 6.4e-105 385.2 413 52.3
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 7.1e-104 381.7 323 61.9
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 7.1e-104 381.7 390 53.8
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.2e-103 380.9 437 51.3
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.6e-103 380.6 399 53.4
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.8e-102 377.1 366 56.6
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.3e-102 376.7 431 52.9
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 4.3e-101 372.5 398 53.8
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 4.3e-101 372.5 316 64.2
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.6e-101 371.3 337 55.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.8e-100 369.8 431 52.4
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.6e-98 363.2 211 91.0
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.3e-92 344.4 422 48.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 4.0e-91 339.3 307 61.9
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.2e-90 337.8 283 62.5
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 1.9e-85 320.5 295 59.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 5.7e-85 318.9 335 49.6
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.8e-84 316.6 187 89.8
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 2.4e-83 313.5 374 45.7
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 3.1e-83 313.2 281 59.8
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 6.9e-83 312.0 369 46.1
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.3e-78 297.0 388 46.9
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 8.7e-78 295.0 286 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.9e-77 293.9 341 45.5
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 3.7e-76 289.7 340 46.2
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 7.4e-69 265.4 255 55.3
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.3e-68 264.6 219 65.8
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.1e-64 251.5 173 71.7
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.9e-64 250.8 302 50.3
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 7.9e-63 245.4 159 78.6
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.1e-61 241.5 263 53.2
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.0e-58 230.7 215 58.6
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.7e-49 201.1 321 37.1
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.0e-45 187.6 341 41.3
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.2e-40 170.2 308 36.0
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.0e-37 161.0 215 40.9
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.8e-37 158.7 168 52.4
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.0e-29 134.4 122 57.4
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.2e-28 131.0 156 47.4
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 2.9e-28 130.6 271 36.2
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.6e-25 119.0 83 75.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.5e-24 117.5 83 73.5
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 1.5e-21 108.2 257 34.6
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 2.9e-12 77.4 62 59.7
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.7e-09 68.2 89 43.8
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 9.5e-08 62.4 46 69.6
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-06 57.0 59 52.5


User provided reference genes

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