Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-29 131.3 65 100.0
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.7e-10 68.2 38 86.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.9e-09 64.3 38 81.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.1e-09 63.9 38 76.3
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 5.1e-09 63.9 38 81.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.7e-09 63.5 38 81.6
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.7e-09 63.5 38 81.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.7e-09 63.2 38 78.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.1e-08 62.8 38 78.9
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.3e-08 61.2 38 78.9
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.3e-08 61.2 38 78.9
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.3e-08 60.8 38 71.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.3e-08 60.8 38 76.3
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 4.3e-08 60.8 38 73.7
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 5.7e-08 60.5 38 76.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 5.7e-08 60.5 38 71.1
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 9.7e-08 59.7 38 73.7
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 9.7e-08 59.7 38 73.7
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.3e-07 59.3 38 73.7
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.3e-07 59.3 38 76.3
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.6e-07 58.9 38 73.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.6e-07 58.9 38 68.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.6e-07 58.9 38 76.3
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.6e-07 58.9 38 68.4
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.6e-07 58.9 38 68.4
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 2.2e-07 58.5 38 73.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.8e-07 58.2 38 68.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.8e-07 58.2 38 68.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.8e-07 58.2 38 73.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.8e-07 58.2 37 70.3
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 3.7e-07 57.8 38 71.1
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 3.7e-07 57.8 37 73.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.7e-07 57.8 38 68.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.7e-07 57.8 38 71.1
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.8e-07 57.4 38 65.8
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 4.8e-07 57.4 38 73.7
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.8e-07 57.4 38 71.1
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.8e-07 57.4 38 73.7
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 6.3e-07 57.0 38 68.4
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 6.3e-07 57.0 38 71.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 8.2e-07 56.6 38 71.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 8.2e-07 56.6 38 65.8
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 8.2e-07 56.6 38 73.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-06 56.2 38 68.4
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.4e-06 55.8 38 68.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.4e-06 55.8 38 71.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-06 55.5 37 70.3
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.8e-06 55.5 37 73.0
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.8e-06 55.5 38 73.7
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.8e-06 55.5 38 73.7
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.8e-06 55.5 38 73.7
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 65.8
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 65.8
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 71.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 71.1
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 65.8
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 65.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.4e-06 55.1 38 65.8
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.1e-06 54.7 38 71.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 3.1e-06 54.7 38 60.5
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.1e-06 54.3 38 65.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 4.1e-06 54.3 37 67.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.1e-06 54.3 38 68.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.1e-06 54.3 38 65.8
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.1e-06 54.3 38 71.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 4.1e-06 54.3 38 68.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.3e-06 53.9 38 65.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.3e-06 53.9 38 68.4
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 5.3e-06 53.9 38 68.4
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 5.3e-06 53.9 37 67.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.3e-06 53.9 38 68.4
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 5.3e-06 53.9 37 64.9
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.9e-06 53.5 37 67.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 6.9e-06 53.5 38 65.8
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 6.9e-06 53.5 32 75.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 9.0e-06 53.1 38 60.5
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 9.0e-06 53.1 38 68.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 9.0e-06 53.1 38 71.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 9.0e-06 53.1 38 68.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 9.0e-06 53.1 37 62.2


User provided reference genes

Program Settings