Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.7e-35 151.0 75 100.0
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.7e-35 151.0 75 100.0
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.1e-34 149.4 75 98.7
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.8e-34 148.7 75 98.7
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 3.8e-32 141.0 75 94.7
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 3.1e-26 121.3 75 81.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.2e-25 119.4 75 81.3
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.9e-24 114.8 74 79.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 3.6e-22 107.8 78 78.2
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 3.0e-21 104.8 74 74.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 5.2e-21 104.0 75 74.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.1e-20 102.8 74 74.3
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.5e-20 102.4 74 70.3
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.0e-20 102.1 74 68.9
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.0e-20 102.1 74 73.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.6e-20 101.7 74 74.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.3e-20 101.3 75 73.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.4e-20 100.9 74 74.3
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 7.4e-20 100.1 79 70.9
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 7.4e-20 100.1 74 71.6
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 9.7e-20 99.8 74 66.2
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 9.7e-20 99.8 76 68.4
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 2.2e-19 98.6 76 68.4
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.2e-19 98.6 75 70.7
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.2e-19 98.6 74 74.3
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.2e-19 98.6 74 68.9
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 2.8e-19 98.2 76 72.4
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.8e-19 98.2 74 67.6
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 4.8e-19 97.4 76 71.1
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-18 95.5 73 69.9
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 3.1e-18 94.7 73 67.1
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 4.1e-18 94.4 74 66.2
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 5.3e-18 94.0 73 67.1
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 5.3e-18 94.0 76 67.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-17 92.4 75 65.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-17 92.4 73 68.5
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.0e-17 92.0 74 70.3
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.6e-17 91.7 75 69.3
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 72 72.2
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.6e-17 91.7 72 72.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.5e-17 90.9 72 70.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.5e-17 90.9 72 72.2
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 4.5e-17 90.9 75 66.7
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 7.7e-17 90.1 81 65.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.0e-16 89.7 69 69.6
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.7e-16 89.0 76 63.2
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.7e-16 89.0 74 63.5
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 74 66.2
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 62.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.8e-16 87.8 76 63.2
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 5.0e-16 87.4 84 59.5
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 5.0e-16 87.4 82 63.4
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.0e-16 87.4 72 66.7
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.5e-16 87.0 70 67.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-15 86.3 71 63.4
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 70 65.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.1e-15 86.3 76 64.5
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.1e-15 86.3 84 58.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 2.5e-15 85.1 72 63.9
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 5.5e-15 84.0 71 62.0
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.5e-15 84.0 78 57.7
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 7.2e-15 83.6 69 63.8
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 68 64.7
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 64 68.8
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.1e-14 82.0 79 59.5
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 2.1e-14 82.0 63 66.7
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-14 82.0 75 61.3
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 65 66.2
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.7e-14 81.6 85 55.3
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.7e-14 81.6 66 65.2
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.6e-14 81.3 72 61.1
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.7e-14 80.9 79 62.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 6.1e-14 80.5 70 61.4
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 8.0e-14 80.1 71 63.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 8.0e-14 80.1 73 64.4
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 8.0e-14 80.1 71 63.4
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-13 79.7 72 58.3
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 72 59.7
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.0e-13 79.7 72 59.7
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 72 59.7
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.0e-13 79.7 70 62.9
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.0e-13 79.7 86 57.0
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 63.4
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.0e-13 79.7 71 63.4
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-13 79.3 84 57.1
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 58.3
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-13 79.0 79 58.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-13 79.0 72 58.3
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.8e-13 79.0 85 56.5
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.8e-13 79.0 72 58.3
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.8e-13 79.0 85 56.5
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.8e-13 79.0 72 58.3
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.8e-13 79.0 82 58.5
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.8e-13 79.0 84 58.3
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 59.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-13 78.6 72 58.3
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 59.0
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 57.8
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 59.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 59.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 59.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 57.8
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.3e-13 78.6 80 57.5
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.3e-13 78.6 83 57.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.3e-13 78.6 72 58.3
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.0e-13 78.2 72 61.1
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-13 78.2 72 58.3
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-13 78.2 72 58.3
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-13 78.2 72 58.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.0e-13 77.8 76 56.6
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.0e-13 77.8 85 56.5
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 59.7
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 59.7
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 59.7
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 75 57.3
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 58.4
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.2e-13 77.4 77 57.1
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 55.7
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-13 77.0 76 59.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-13 77.0 83 56.6
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 6.8e-13 77.0 83 56.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.8e-13 76.6 66 62.1
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 8.8e-13 76.6 72 55.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 75 57.3
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.5e-12 75.9 75 56.0
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 65 63.1
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.0e-12 75.5 67 65.7
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.4e-12 74.7 75 58.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.7e-12 73.9 83 54.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 5.7e-12 73.9 79 58.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.7e-12 73.2 75 53.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.7e-11 72.4 66 62.1
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 4.8e-11 70.9 70 52.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 6.3e-11 70.5 85 51.8
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.4e-10 69.3 56 64.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.4e-10 68.6 75 52.0
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.4e-10 68.6 72 51.4
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.6e-09 65.9 89 48.3
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.0e-09 65.5 86 48.8
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.7e-09 65.1 72 45.8
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 5.9e-09 63.9 82 47.6
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-08 62.4 94 45.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.2e-08 62.0 73 45.2
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 6.5e-08 60.5 67 52.2
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.5e-07 59.3 75 45.3
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.6e-06 55.8 67 46.3
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.0e-06 53.5 72 45.8


User provided reference genes

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