Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.6e-251 870.5 460 100.0
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.4e-246 855.1 460 98.0
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.4e-246 854.0 461 97.8
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.7e-207 726.1 470 83.4
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.8e-188 662.9 342 98.2
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.2e-182 641.7 393 85.5
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 2.3e-164 582.8 479 68.7
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 1.2e-160 570.5 480 66.9
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 7.7e-152 541.2 476 64.5
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.7e-146 523.5 473 64.7
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 7.8e-144 514.6 473 64.5
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.0e-143 514.2 474 62.9
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 1.3e-143 513.8 474 62.2
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 1.5e-142 510.4 463 64.1
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.9e-142 510.0 471 61.8
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 8.0e-141 504.6 470 64.5
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 6.8e-140 501.5 473 62.2
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 6.8e-140 501.5 453 60.5
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.3e-138 497.3 407 68.3
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 1.7e-138 496.9 473 60.7
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 9.2e-137 491.1 470 60.6
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 2.7e-136 489.6 473 60.7
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.7e-136 489.6 470 60.4
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 4.6e-136 488.8 489 58.5
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 2.3e-135 486.5 473 59.2
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 8.6e-135 484.6 468 58.3
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 5.6e-134 481.9 473 60.7
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 9.5e-134 481.1 470 59.1
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 2.3e-132 476.5 532 52.4
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 2.0e-131 473.4 475 58.3
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.9e-130 469.5 466 60.3
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.9e-130 469.5 433 60.7
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.1e-129 467.6 463 56.8
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.9e-126 456.8 411 61.6
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 9.5e-126 454.5 441 60.3
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 3.1e-124 449.5 477 58.9
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 8.9e-124 448.0 475 58.1
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.6e-123 446.4 470 56.6
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 3.4e-123 446.0 472 55.7
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 5.8e-123 445.3 470 56.4
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 9.9e-123 444.5 469 55.2
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.2e-122 443.4 475 56.6
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 6.4e-122 441.8 475 56.4
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 3.2e-121 439.5 487 53.2
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 3.2e-121 439.5 471 55.0
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 3.2e-121 439.5 475 56.2
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 1.6e-120 437.2 461 57.0
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.6e-120 437.2 476 54.0
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.9e-119 432.6 473 56.2
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 1.9e-118 430.3 446 59.2
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 2.5e-118 429.9 467 55.7
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 5.6e-118 428.7 441 59.2
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 7.3e-118 428.3 476 55.5
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 2.1e-117 426.8 480 54.2
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.8e-117 426.4 472 53.0
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 4.7e-117 425.6 467 54.0
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.4e-116 423.3 469 53.7
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 4.0e-116 422.5 463 52.3
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.5e-115 420.6 450 57.8
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 4.4e-115 419.1 479 54.9
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 7.6e-115 418.3 477 52.0
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 9.9e-115 417.9 463 53.6
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 2.2e-114 416.8 408 58.3
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 7.1e-113 411.8 432 54.9
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.1e-110 404.4 451 57.4
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 2.8e-109 399.8 480 53.3
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 1.8e-108 397.1 355 60.3
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 4.0e-108 396.0 465 51.0
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 6.9e-108 395.2 473 54.8
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 9.0e-108 394.8 444 57.0
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 3.8e-106 389.4 403 56.8
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 8.4e-106 388.3 429 53.6
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.9e-105 387.1 455 50.1
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 2.1e-104 383.6 467 52.9
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 2.7e-104 383.3 349 58.5
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.6e-104 382.5 338 61.8
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 7.9e-104 381.7 451 55.7
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.0e-103 381.3 445 54.4
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 1.1e-102 377.9 444 53.6
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.5e-102 377.5 445 53.0
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 5.6e-102 375.6 445 53.3
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 5.6e-102 375.6 447 53.9
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 6.2e-101 372.1 342 60.5
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 1.1e-100 371.3 462 50.0
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 6.9e-100 368.6 489 47.0
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 9.0e-100 368.2 404 51.5
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.5e-99 367.5 434 50.7
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.3e-95 354.4 262 67.6
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.1e-93 347.1 366 55.2
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 1.2e-91 341.3 393 50.1
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 2.8e-85 320.1 402 50.2
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.9e-82 310.1 380 47.9
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 3.7e-77 293.1 319 50.8
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.4e-73 281.2 502 40.8
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.7e-72 276.9 472 43.9
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.4e-71 274.6 280 55.4
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.7e-69 266.5 474 42.6
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 3.1e-68 263.5 441 44.0
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 9.1e-68 261.9 454 39.9
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 7.7e-67 258.8 178 71.3
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.1e-56 224.2 398 44.5
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.4e-52 211.5 226 50.0
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.9e-49 201.1 418 34.9
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 2.3e-47 194.1 176 60.8
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 8.0e-40 169.1 225 50.2
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.1e-32 144.4 195 45.1
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 8.6e-26 122.5 186 45.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 6.4e-21 106.3 220 36.8
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 1.1e-12 79.0 76 56.6
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 9.5e-09 65.9 42 69.0


User provided reference genes

Program Settings