Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.0e-54 215.3 330 100.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 8.8e-49 198.4 105 97.1
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-48 197.6 105 96.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-48 197.6 105 96.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.4e-48 196.4 105 95.2
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.8e-46 190.7 105 92.4
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 4.1e-46 189.5 106 93.4
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 7.0e-46 188.7 105 92.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 7.7e-45 185.3 105 91.4
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.2e-43 178.7 106 87.7
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 7.2e-43 178.7 106 87.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.8e-42 176.8 105 83.8
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.8e-42 176.8 105 83.8
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.0e-41 174.9 98 86.7
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.8e-41 174.1 104 85.6
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.3e-41 173.7 99 85.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.0e-41 173.3 98 86.7
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.0e-41 173.3 98 85.7
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.0e-41 172.9 102 84.3
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.2e-40 171.4 102 85.3
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.2e-40 171.4 98 84.7
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.2e-40 171.4 98 84.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-40 171.0 105 80.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.5e-40 171.0 98 85.7
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.0e-40 170.6 105 82.9
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.0e-40 170.6 98 85.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 3.4e-40 169.9 96 86.5
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 5.7e-40 169.1 102 85.3
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 5.7e-40 169.1 101 84.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 5.7e-40 169.1 102 82.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.5e-40 168.7 98 87.8
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.3e-39 167.9 98 84.7
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.3e-39 167.9 103 82.5
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-39 167.5 99 80.8
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.7e-39 167.5 93 86.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-39 167.5 98 82.7
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.7e-39 167.5 95 85.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.7e-39 167.5 102 81.4
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.2e-39 167.2 95 87.4
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-39 167.2 93 86.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-39 167.2 93 86.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.2e-39 167.2 92 89.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.2e-39 167.2 105 81.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.2e-39 167.2 97 88.7
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.9e-39 166.8 100 85.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.9e-39 166.8 102 84.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.9e-39 166.8 93 84.9
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.9e-39 166.8 94 87.2
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 86.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.7e-39 166.4 95 87.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 86.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 86.2
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 86.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 86.2
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.7e-39 166.4 102 83.3
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.7e-39 166.4 94 85.1
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 4.9e-39 166.0 97 85.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.9e-39 166.0 98 82.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 4.9e-39 166.0 93 84.9
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.9e-39 166.0 98 83.7
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.9e-39 166.0 98 83.7
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.3e-39 165.6 95 86.3
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 6.3e-39 165.6 106 83.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.3e-39 165.2 95 86.3
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.3e-39 165.2 94 86.2
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 8.3e-39 165.2 102 79.4
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-38 164.9 105 79.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.1e-38 164.9 105 80.0
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.1e-38 164.9 102 83.3
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.1e-38 164.9 102 79.4
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.1e-38 164.9 102 81.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.1e-38 164.9 102 80.4
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.1e-38 164.9 99 82.8
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.4e-38 164.5 94 86.2
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.4e-38 164.5 105 81.9
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.4e-38 164.5 105 81.9
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.4e-38 164.5 96 85.4
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.8e-38 164.1 95 86.3
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.8e-38 164.1 104 80.8
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 2.4e-38 163.7 100 85.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.4e-38 163.7 94 85.1
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-38 163.7 94 85.1
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.4e-38 163.7 95 85.3
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.4e-38 163.7 95 85.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 2.4e-38 163.7 99 81.8
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 3.2e-38 163.3 95 86.3
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-38 163.3 99 81.8
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-38 163.3 100 80.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-38 163.3 100 80.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.2e-38 163.3 100 80.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 3.2e-38 163.3 103 79.6
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.1e-38 162.9 97 83.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 4.1e-38 162.9 99 81.8
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.4e-38 162.5 104 80.8
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 5.4e-38 162.5 105 78.1
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.4e-38 162.5 100 82.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 7.0e-38 162.2 95 86.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 7.0e-38 162.2 93 82.8
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 7.0e-38 162.2 91 87.9
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 9.2e-38 161.8 97 83.5
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 9.2e-38 161.8 97 83.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 9.2e-38 161.8 97 84.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.2e-38 161.8 95 84.2
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 9.2e-38 161.8 83 91.6
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.2e-37 161.4 101 79.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.2e-37 161.4 98 81.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-37 161.4 95 85.3
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.6e-37 161.0 97 84.5
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.0e-37 160.6 98 83.7
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.0e-37 160.6 95 81.1
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.7e-37 160.2 109 76.1
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 3.5e-37 159.8 100 80.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.6e-37 159.5 96 83.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.6e-37 159.5 96 83.3
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.6e-37 159.5 105 78.1
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.9e-37 159.1 107 79.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.9e-37 159.1 105 76.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 7.8e-37 158.7 104 76.9
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.8e-37 158.7 99 81.8
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.8e-37 158.7 105 78.1
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 7.8e-37 158.7 93 83.9
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-36 157.9 96 83.3
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.3e-36 157.9 109 75.2
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.7e-36 157.5 105 78.1
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.7e-36 157.5 96 82.3
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.0e-36 156.0 95 82.1
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.0e-36 156.0 96 81.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 5.0e-36 156.0 105 76.2
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.6e-36 155.6 97 80.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.1e-35 154.8 105 76.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.1e-35 154.8 105 78.1
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.9e-35 154.1 105 75.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.5e-35 153.7 105 75.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.5e-35 153.7 111 75.7
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.3e-35 153.3 105 74.3
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.3e-35 153.3 73 97.3
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-35 153.3 96 79.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.3e-35 153.3 96 79.2
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 4.3e-35 152.9 73 95.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 7.3e-35 152.1 105 75.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.2e-34 149.1 92 80.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 6.2e-34 149.1 102 74.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.0e-33 148.3 92 80.4
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.2e-32 144.8 107 72.0
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.9e-30 137.5 73 86.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.4e-30 137.1 100 70.0
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.2e-30 136.7 95 71.6
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.2e-30 136.7 120 65.0
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.2e-30 136.7 120 65.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.1e-30 136.3 104 67.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.4e-30 136.0 95 72.6
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.2e-29 134.8 73 87.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.6e-28 128.6 109 66.1
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.3e-27 126.7 107 64.5
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.3e-27 126.7 104 59.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 7.3e-27 125.6 102 62.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 5.2e-25 119.4 86 75.6
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 8.9e-25 118.6 116 61.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.7e-21 107.1 75 64.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.1e-20 102.8 65 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 8.6e-20 102.1 97 60.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-19 101.3 73 68.5
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.6e-18 96.7 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.4e-16 89.7 64 62.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-12 78.6 43 81.4
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.3e-12 78.2 77 53.2
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.9e-12 76.6 50 74.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.5e-11 74.7 98 49.0
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-08 63.2 40 75.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 9.9e-08 62.0 94 46.8
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-07 60.8 32 90.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 8.4e-07 58.9 94 44.7


User provided reference genes

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