Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-195 685.3 358 100.0
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-189 666.4 358 97.8
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-189 666.4 358 97.8
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.6e-189 666.0 358 97.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-187 659.8 358 97.2
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.0e-183 646.7 358 95.3
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.4e-172 609.8 357 88.8
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 2.6e-147 525.8 365 77.0
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 7.4e-126 454.5 364 65.9
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 7.2e-121 438.0 365 62.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 7.2e-121 438.0 366 63.7
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 4.7e-120 435.3 343 66.2
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 8.0e-120 434.5 365 63.0
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.7e-117 426.8 353 64.9
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 3.7e-117 425.6 353 64.0
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.8e-117 425.2 361 60.4
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 9.1e-116 421.0 368 62.5
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 9.1e-116 421.0 406 56.7
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.2e-115 420.6 365 61.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.0e-115 419.9 365 62.7
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 2.6e-115 419.5 365 62.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 3.8e-114 415.6 353 62.9
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.1e-113 414.1 358 60.1
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 4.2e-113 412.1 363 59.5
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 7.2e-113 411.4 365 61.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 9.4e-113 411.0 367 59.7
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 1.6e-112 410.2 365 62.5
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 2.1e-112 409.8 364 59.6
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.7e-112 409.5 365 59.5
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 3.6e-112 409.1 366 59.8
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 3.6e-112 409.1 360 60.8
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 3.6e-112 409.1 359 61.0
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.7e-112 408.7 364 59.1
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.4e-111 407.1 367 60.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 2.3e-111 406.4 367 59.9
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 6.7e-111 404.8 362 60.2
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 8.8e-111 404.4 358 58.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.5e-110 403.7 366 59.3
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.0e-110 403.3 370 58.6
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 9.7e-110 401.0 357 61.9
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.7e-109 400.2 365 58.6
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.8e-109 399.4 368 60.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.8e-109 398.7 358 60.1
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 8.2e-109 397.9 361 58.4
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.1e-108 397.5 357 59.4
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.1e-108 395.6 359 59.9
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 7.0e-108 394.8 356 59.0
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 7.0e-108 394.8 357 59.1
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 7.0e-108 394.8 363 59.8
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 2.0e-107 393.3 364 58.0
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.0e-107 393.3 343 61.2
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 3.5e-107 392.5 347 59.9
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 3.8e-106 389.0 363 57.6
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.2e-105 386.0 361 59.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 3.2e-105 386.0 349 59.0
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.4e-103 380.6 406 53.2
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.5e-102 377.1 361 56.0
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 2.6e-102 376.3 342 59.1
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 3.4e-102 375.9 343 56.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 3.4e-102 375.9 365 56.4
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 4.4e-102 375.6 362 56.4
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.7e-101 373.6 359 56.0
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.7e-101 372.5 320 62.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 8.3e-101 371.3 366 53.6
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 7.0e-100 368.2 409 50.9
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.2e-99 367.5 345 56.2
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 7.7e-99 364.8 341 57.8
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 3.8e-98 362.5 335 58.2
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 8.6e-98 361.3 339 56.3
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 8.6e-98 361.3 340 56.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.5e-97 359.8 367 52.3
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.5e-97 358.6 360 54.2
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 9.5e-97 357.8 344 54.1
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 6.1e-96 355.1 341 55.7
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.8e-95 353.6 358 52.0
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.8e-95 353.6 348 55.2
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.2e-94 350.9 342 54.4
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.4e-94 349.4 360 53.3
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.7e-94 348.6 360 52.8
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.7e-93 347.1 360 51.9
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.1e-92 344.4 362 53.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-92 344.0 344 54.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 4.1e-92 342.4 370 51.4
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 4.1e-92 342.4 343 53.9
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.2e-91 340.9 351 53.3
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-91 340.5 342 54.7
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 2.7e-91 339.7 352 53.4
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.0e-90 337.8 358 52.8
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.3e-90 336.7 352 53.7
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 4.3e-89 332.4 307 58.6
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 5.6e-89 332.0 298 59.4
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 7.3e-89 331.6 307 61.2
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 6.1e-88 328.6 363 49.9
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.0e-87 326.2 354 53.1
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.0e-87 325.9 344 51.2
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 6.8e-87 325.1 344 51.2
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.0e-86 323.6 302 57.9
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 1.7e-85 320.5 350 51.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.4e-84 317.4 319 54.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.2e-84 316.2 359 47.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 4.1e-84 315.8 349 49.9
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.3e-82 310.8 341 51.0
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 3.0e-82 309.7 344 50.0
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.5e-81 307.4 362 48.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 4.0e-79 299.3 375 45.6
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 5.2e-79 298.9 314 51.6
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 5.8e-78 295.4 345 48.4
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.9e-77 293.1 286 57.7
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.3e-74 283.5 347 45.8
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 6.6e-74 282.0 336 44.9
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.1e-72 276.9 282 56.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 9.9e-70 268.1 356 42.1
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 6.0e-67 258.8 351 41.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.3e-66 257.7 357 42.0
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 9.5e-65 251.5 342 43.3
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.6e-64 250.8 245 58.4
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 6.2e-64 248.8 274 52.9
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.8e-63 247.3 342 43.6
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.7e-61 240.7 229 59.8
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 2.9e-61 240.0 242 53.7
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.2e-56 224.6 242 52.5
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.1e-56 223.8 353 39.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 3.6e-56 223.0 216 55.1
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 6.9e-55 218.8 345 39.1
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.8e-47 194.1 274 45.6
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.4e-46 189.9 298 40.3
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.3e-42 177.2 314 37.6
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.0e-42 176.8 224 49.1
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 7.9e-35 152.1 357 29.7
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 7.4e-33 145.6 184 46.2
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 2.1e-32 144.1 134 53.0
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-31 140.2 371 30.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 4.0e-31 139.8 426 27.0
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 4.5e-30 136.3 129 51.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 4.6e-27 126.3 148 54.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.3e-17 93.2 171 38.0
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 1.3e-13 81.6 56 67.9
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.7e-13 81.3 56 67.9
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.8e-13 80.1 55 65.5
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 7.9e-11 72.4 144 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.7e-08 63.5 177 31.1
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.1e-07 62.0 268 25.0


User provided reference genes

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