Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2538 Fragaria x ananassa HOM05D007299 ORTHO05D009106 4.3e-190 667.9 360 100.0
FAN22G0217 Fragaria x ananassa HOM05D007299 ORTHO05D009106 1.1e-180 636.7 360 96.1
FvH4_4g36440 Fragaria vesca HOM05D007299 ORTHO05D009106 3.1e-180 635.2 361 96.4
FAN17G2059 Fragaria x ananassa HOM05D007299 ORTHO05D009106 1.2e-179 633.3 360 96.4
FAN12G2175 Fragaria x ananassa HOM05D007299 ORTHO05D009106 7.1e-177 624.0 361 95.6
RcHm_v2.0_Chr4g0446201 Rosa chinensis HOM05D007299 ORTHO05D009106 6.1e-120 434.9 290 83.4
MD13G1009200 Malus domestica HOM05D007299 ORTHO05D009106 3.6e-96 355.9 296 73.0
Prupe.1G343500 Prunus persica HOM05D007299 ORTHO05D009106 2.2e-93 346.7 303 69.6
MD16G1007200 Malus domestica HOM05D007299 ORTHO05D009106 7.8e-91 338.2 292 70.2
CANSAT78G0052 Cannabis sativa HOM05D007299 ORTHO05D009106 7.1e-76 288.5 301 56.5
Cfa015123 Carpinus fangiana HOM05D007299 ORTHO05D009106 1.9e-73 280.4 288 60.4
GSVIVG01010231001 Vitis vinifera HOM05D007299 ORTHO05D009106 3.3e-73 279.6 298 58.1
Lj3g0027807 Lotus japonicus HOM05D007299 ORTHO05D009106 1.5e-70 270.8 279 58.8
MELO3C004425.2 Cucumis melo HOM05D007299 ORTHO05D009106 5.8e-70 268.9 287 54.4
Manes.10G068700 Manihot esculenta HOM05D007299 ORTHO05D009106 9.9e-70 268.1 291 55.0
Cpa.g.sc2.109 Carica papaya HOM05D007299 ORTHO05D009106 1.3e-69 267.7 286 56.6
Dinv13815 Davidia involucrata HOM05D007299 ORTHO05D009106 6.4e-69 265.4 292 54.8
TPR.G24986 Trifolium pratense HOM05D007299 ORTHO05D009106 8.4e-69 265.0 281 58.4
CiPaw.05G165900 Carya illinoinensis HOM05D007299 ORTHO05D009106 1.1e-68 264.6 284 53.5
Sed0015300 Sechium edule HOM05D007299 ORTHO05D009106 1.1e-68 264.6 282 55.3
TWI77G0874 Tripterygium wilfordii HOM05D007299 ORTHO05D009106 1.4e-68 264.2 292 56.2
Glyma.11G099800 Glycine max HOM05D007299 ORTHO05D009106 2.4e-68 263.5 277 60.6
Nn3g18668 Nelumbo nucifera HOM05D007299 ORTHO05D009106 4.2e-68 262.7 286 54.9
VMungo1127G0955 Vigna mungo HOM05D007299 ORTHO05D009106 7.1e-68 261.9 288 59.0
TAR622G0038 Trochodendron aralioides HOM05D007299 ORTHO05D009106 1.2e-67 261.2 292 56.5
Phvul.011G028100 Phaseolus vulgaris HOM05D007299 ORTHO05D009106 7.9e-67 258.5 289 57.4
Ciclev10005530m.g Citrus clementina HOM05D007299 ORTHO05D009106 2.3e-66 256.9 297 57.6
PGR044G1966 Punica granatum HOM05D007299 ORTHO05D009106 2.3e-66 256.9 317 50.8
PSO384G1235 Papaver somniferum HOM05D007299 ORTHO05D009106 5.1e-66 255.8 300 55.7
Actinidia13749 Actinidia chinensis HOM05D007299 ORTHO05D009106 8.7e-66 255.0 316 52.2
Glyma.12G025700 Glycine max HOM05D007299 ORTHO05D009106 2.5e-65 253.4 281 59.1
Eucgr.J01834 Eucalyptus grandis HOM05D007299 ORTHO05D009106 5.6e-65 252.3 291 51.5
Ca_19013_v3 Cicer arietinum L. HOM05D007299 ORTHO05D009106 7.3e-65 251.9 279 57.7
Psat7g177800 Pisum sativum HOM05D007299 ORTHO05D009106 1.1e-63 248.1 271 57.2
Cc11_g02600 Coffea canephora HOM05D007299 ORTHO05D009106 3.1e-63 246.5 380 45.3
MBI03_g22264_MAGBIO Magnolia biondii HOM05D007299 ORTHO05D009106 4.0e-63 246.1 313 49.8
COL.COLO4_27652 Corchorus olitorius HOM05D002463 ORTHO05D002669 5.3e-63 245.7 293 50.2
Rhsim09G0078300 Rhododendron simsii HOM05D007299 ORTHO05D009106 5.3e-63 245.7 293 55.6
Lalb_Chr19g0139441 Lupinus albus HOM05D007299 ORTHO05D009106 6.9e-63 245.4 283 53.4
arahy.Tifrunner.gnm1.ann1.NVJW8G Arachis hypogaea HOM05D007299 ORTHO05D009106 9.0e-63 245.0 297 54.5
arahy.Tifrunner.gnm1.ann1.IBNY1Y Arachis hypogaea HOM05D007299 ORTHO05D009106 2.6e-62 243.4 295 52.9
ECA246G3185 Erigeron canadensis HOM05D007299 ORTHO05D009106 7.6e-62 241.9 298 49.3
PSO339G0795 Papaver somniferum HOM05D007299 ORTHO05D009106 9.9e-62 241.5 298 53.0
vmacro10889 Vaccinium macrocarpon HOM05D007299 ORTHO05D009106 2.9e-61 240.0 309 52.1
Duzib268G1125 Durio zibethinus HOM05D007299 ORTHO05D009106 8.4e-61 238.4 312 51.9
Potri.010G097400 Populus trichocarpa HOM05D007299 ORTHO05D009106 2.4e-60 236.9 297 54.5
Atru.chr11.1092 Acer truncatum HOM05D007299 ORTHO05D009106 2.7e-59 233.4 231 58.0
Aqoxy3G04214 Aquilegia oxysepala HOM05D007299 ORTHO05D009106 3.5e-59 233.0 291 50.2
CsaV3_2G003690 Cucumis sativus L. HOM05D007299 ORTHO05D009106 4.6e-59 232.6 286 51.4
Hund24259 Selenicereus undatus HOM05D007299 ORTHO05D009106 3.9e-58 229.6 301 46.8
Thecc.02G310600 Theobroma cacao HOM05D007299 ORTHO05D009106 6.7e-58 228.8 314 50.0
Lj3A853G78 Lonicera japonica HOM05D007299 ORTHO05D009106 1.1e-57 228.0 255 54.1
DCAR_023506 Daucus carota HOM05D007299 ORTHO05D009106 1.5e-57 227.6 337 50.1
Lsat_1_v5_gn_3_34281 Lactuca sativa HOM05D007299 ORTHO05D009106 3.3e-57 226.5 298 48.0
Nitab4.5_0000129g0380 Nicotiana tabacum HOM05D007299 ORTHO05D009106 4.3e-57 226.1 290 53.4
QL03p042773 Quercus lobata HOM05D007299 ORTHO05D009106 7.4e-57 225.3 182 66.5
Migut.L00603 Erythranthe guttata HOM05D007299 ORTHO05D009106 3.7e-56 223.0 284 47.5
Aa31LG5G13290 Aethionema arabicum HOM05D007299 ORTHO05D009106 4.8e-56 222.6 289 47.4
Gohir.D02G135500 Gossypium hirsutum HOM05D007299 ORTHO05D009106 8.1e-56 221.9 311 51.4
Sabra10G0069800 Salix brachista HOM05D007299 ORTHO05D009106 1.4e-55 221.1 330 49.1
PGSC0003DMG400031371 Solanum tuberosum HOM05D007299 ORTHO05D009106 1.4e-55 221.1 304 44.7
AUR62015163 Chenopodium quinoa HOM05D007299 ORTHO05D009106 2.4e-55 220.3 312 44.6
BraA06t23286Z Brassica rapa HOM05D007299 ORTHO05D009106 5.3e-55 219.2 292 47.3
Sc21g0004170 Simmondsia chinensis HOM05D007299 ORTHO05D009106 5.3e-55 219.2 302 45.4
Gorai.005G151500 Gossypium raimondii HOM05D007299 ORTHO05D009106 2.0e-54 217.2 311 51.4
Sp3g01850 Schrenkiella parvula HOM05D007299 ORTHO05D009106 4.5e-54 216.1 285 47.4
HPP92_025841 Vanilla planifolia HOM05D007299 ORTHO05D009106 5.8e-54 215.7 219 53.4
Carub.0003s0192 Capsella rubella HOM05D007299 ORTHO05D009106 2.2e-53 213.8 282 46.8
AL3G12230 Arabidopsis lyrata HOM05D007299 ORTHO05D009106 4.9e-53 212.6 284 46.5
A05p44300 Brassica napus HOM05D007299 ORTHO05D009106 1.4e-52 211.1 283 47.3
THA.LOC104820913 Tarenaya hassleriana HOM05D007299 ORTHO05D009106 5.5e-52 209.1 219 54.8
AT3G02820 Arabidopsis thaliana HOM05D007299 ORTHO05D009106 7.1e-52 208.8 275 44.7
Thhalv10021242m.g Eutrema salsugineum HOM05D007299 ORTHO05D009106 9.3e-52 208.4 284 44.4
Os02g0762200 Oryza sativa ssp. japonica HOM05D007299 ORTHO05D009106 9.3e-52 208.4 327 47.7
HanXRQChr08g0209311 Helianthus annuus HOM05D007299 ORTHO05D009106 1.2e-51 208.0 295 45.8
CAN.G880.11 Capsicum annuum HOM05D007299 ORTHO05D009106 2.1e-51 207.2 283 46.3
Solyc04g008600.4 Solanum lycopersicum HOM05D007299 ORTHO05D009106 2.7e-51 206.8 290 50.3
CARHR076830 Cardamine hirsuta HOM05D007299 ORTHO05D009106 2.3e-50 203.8 289 45.3
C09p75940 Brassica napus HOM05D007299 ORTHO05D009106 5.1e-50 202.6 282 46.8
BolC5t35063H Brassica oleracea HOM05D007299 ORTHO05D009106 5.1e-50 202.6 282 46.8
Sopen04g003760 Solanum pennellii HOM05D007299 ORTHO05D009106 2.5e-49 200.3 290 49.7
SGA_v2.0_scaffold47G17515 Striga asiatica HOM05D007299 ORTHO05D009106 2.1e-48 197.2 292 42.5
EL10Ac9g22867 Beta vulgaris HOM05D007299 ORTHO05D009106 4.1e-47 193.0 285 43.9
MSTRG.422 Avicennia marina HOM05D007299 ORTHO05D009106 4.5e-46 189.5 166 56.6
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.0e-45 188.3 297 42.1
ATR0618G188 Amborella trichopoda HOM05D007299 ORTHO05D009106 3.8e-45 186.4 221 48.0
SEGI_39636 Sequoiadendron giganteum HOM05D007299 ORTHO05D009106 5.5e-44 182.6 296 41.2
Nitab4.5_0003882g0040 Nicotiana tabacum HOM05D007299 ORTHO05D009106 4.6e-43 179.5 287 47.7
Peaxi162Scf00329g00814 Petunia axillaris HOM05D007299 ORTHO05D009106 1.0e-42 178.3 281 44.8
Zm00001eb228900 Zea mays HOM05D007299 ORTHO05D009106 1.6e-35 154.5 156 52.6
Pp3c24_950 Physcomitrium patens HOM05D007299 ORTHO05D009106 2.7e-35 153.7 303 35.0
AagrBONN_evm.TU.Sc2ySwM_344.3308 Anthoceros agrestis HOM05D007299 ORTHO05D009106 1.4e-28 131.3 210 40.0
Mapoly0024s0064 Marchantia polymorpha HOM05D007299 ORTHO05D009106 2.7e-27 127.1 320 33.4
Gohir.A03G110900 Gossypium hirsutum HOM05D007299 ORTHO05D009106 4.7e-27 126.3 176 49.4
CDE04G3037 Ceratophyllum demersum HOM05D007299 ORTHO05D009106 5.1e-26 122.9 217 38.2
AUR62017615 Chenopodium quinoa HOM05D007299 ORTHO05D009106 8.8e-26 122.1 152 45.4
Ah.01g013250 Amaranthus hybridus HOM05D007299 ORTHO05D009106 2.4e-23 114.0 177 42.9
Oeu061722.1 Olea europaea HOM05D007299 ORTHO05D009106 5.9e-22 109.4 104 55.8
SMO339G0024 Selaginella moellendorffii HOM05D007299 ORTHO05D009106 2.5e-20 104.0 279 33.7
Glyma.14G178300 Glycine max HOM05D007299 ORTHO05D009106 3.6e-19 100.1 158 51.9
ClCG02G017080 Citrullus lanatus HOM05D007299 ORTHO05D009106 4.4e-17 93.2 143 46.9
MCO03G157 Micromonas commoda HOM05D007299 ORTHO05D009106 6.5e-13 79.3 159 32.1
QL03p042779 Quercus lobata HOM05D007299 ORTHO05D009106 2.1e-11 74.3 110 48.2


User provided reference genes

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