Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2511 Fragaria x ananassa HOM05D000634 ORTHO05D000517 1.3e-39 166.0 85 100.0
FvH4_4g29701 Fragaria vesca HOM05D000634 ORTHO05D000517 1.8e-22 109.0 63 87.3
FAN07G0390 Fragaria x ananassa HOM05D000634 ORTHO05D007695 1.8e-22 109.0 62 87.1
FAN12G1640 Fragaria x ananassa HOM05D006251 ORTHO05D007695 2.4e-22 108.6 62 87.1
RcHm_v2.0_Chr4g0437951 Rosa chinensis HOM05D000634 ORTHO05D000517 3.1e-22 108.2 62 85.5
FAN17G1351 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.3e-17 92.8 53 86.8
FAN22G1444 Fragaria x ananassa HOM05D006251 ORTHO05D007695 2.3e-17 92.0 53 86.8
Thecc.02G327200 Theobroma cacao HOM05D000634 ORTHO05D000517 2.6e-13 78.6 67 64.2
MD16G1059300 Malus domestica HOM05D000634 ORTHO05D000517 1.0e-12 76.6 67 59.7
Prupe.1G289700 Prunus persica HOM05D000634 ORTHO05D000517 2.2e-12 75.5 64 62.5
Cfa008861 Carpinus fangiana HOM05D000634 ORTHO05D000517 3.8e-12 74.7 66 59.1
Thecc.02G327600 Theobroma cacao HOM05D000634 ORTHO05D000517 5.0e-12 74.3 67 58.2
MD13G1059800 Malus domestica HOM05D000634 ORTHO05D000517 6.5e-12 73.9 67 59.7
Actinidia16151 Actinidia chinensis HOM05D000634 ORTHO05D000517 8.5e-12 73.6 66 60.6
Duzib251G0745 Durio zibethinus HOM05D000634 ORTHO05D000517 1.1e-11 73.2 67 53.7
CiPaw.05G123700 Carya illinoinensis HOM05D000634 ORTHO05D000517 1.4e-11 72.8 66 59.1
Manes.01G026500 Manihot esculenta HOM05D000634 ORTHO05D000517 1.4e-11 72.8 67 58.2
vmacro20924 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 2.5e-11 72.0 67 58.2
Atru.chr11.1601 Acer truncatum HOM05D000634 ORTHO05D000517 3.2e-11 71.6 67 58.2
Gohir.A03G105300 Gossypium hirsutum HOM05D000634 ORTHO05D000517 4.2e-11 71.2 67 55.2
Eucgr.B03141 Eucalyptus grandis HOM05D000634 ORTHO05D000517 5.5e-11 70.9 65 55.4
Rhsim09G0125900 Rhododendron simsii HOM05D000634 ORTHO05D007695 5.5e-11 70.9 66 57.6
TWI75G0732 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 7.2e-11 70.5 67 56.7
Dinv34050 Davidia involucrata HOM05D000634 ORTHO05D000517 1.6e-10 69.3 67 53.7
COL.COLO4_27854 Corchorus olitorius HOM05D000634 ORTHO05D000517 2.1e-10 68.9 66 54.5
Gohir.D13G083500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 2.1e-10 68.9 67 53.7
Gorai.013G095300 Gossypium raimondii HOM05D000634 ORTHO05D000517 2.1e-10 68.9 67 53.7
Ciclev10033049m.g Citrus clementina HOM05D000634 ORTHO05D000517 2.7e-10 68.6 67 56.7
ECA233G2971 Erigeron canadensis HOM05D000634 ORTHO05D000517 2.7e-10 68.6 65 56.9
QL03p073739 Quercus lobata HOM05D000634 ORTHO05D000517 2.7e-10 68.6 63 55.6
Gohir.A13G084232 Gossypium hirsutum HOM05D000634 ORTHO05D000517 4.6e-10 67.8 67 53.7
VMungo1215G3023 Vigna mungo HOM05D000634 ORTHO05D000517 6.1e-10 67.4 63 58.7
GSVIVG01012239001 Vitis vinifera HOM05D000634 ORTHO05D000517 6.1e-10 67.4 67 50.7
Gorai.005G146500 Gossypium raimondii HOM05D000634 ORTHO05D000517 7.9e-10 67.0 67 53.7
HanXRQChr08g0212521 Helianthus annuus HOM05D000634 ORTHO05D000517 7.9e-10 67.0 65 56.9
MD13G1059900 Malus domestica HOM05D000634 ORTHO05D000517 7.9e-10 67.0 64 54.7
Gohir.D02G130600 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.4e-09 66.2 67 53.7
PGR102G1858 Punica granatum HOM05D000634 ORTHO05D000517 1.8e-09 65.9 68 54.4
ClCG08G010480 Citrullus lanatus HOM05D000634 ORTHO05D000517 2.3e-09 65.5 64 57.8
Sopen05g006870 Solanum pennellii HOM05D000634 ORTHO05D000517 3.0e-09 65.1 66 56.1
TWI79G1333 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 3.0e-09 65.1 63 58.7
Haze_11884 Corylus avellana HOM05D000934 ORTHO05D000746 3.9e-09 64.7 57 59.6
Migut.E00045 Erythranthe guttata HOM05D000634 ORTHO05D000517 3.9e-09 64.7 65 52.3
Duzib251G0159 Durio zibethinus HOM05D000634 ORTHO05D000517 5.1e-09 64.3 67 50.7
Solyc05g012080.3 Solanum lycopersicum HOM05D000634 ORTHO05D000517 6.7e-09 63.9 66 54.5
PGSC0003DMG400028310 Solanum tuberosum HOM05D000634 ORTHO05D000517 8.8e-09 63.5 66 54.5
CAN.G707.22 Capsicum annuum HOM05D000634 ORTHO05D000517 1.9e-08 62.4 66 51.5
Dinv20150 Davidia involucrata HOM05D000634 ORTHO05D000517 1.9e-08 62.4 64 50.0
Sabra08G0073700 Salix brachista HOM05D000634 ORTHO05D000517 1.9e-08 62.4 66 50.0
Aa31LG7G8710 Aethionema arabicum HOM05D000634 ORTHO05D000517 2.5e-08 62.0 72 45.8
Cc11_g11790 Coffea canephora HOM05D000634 ORTHO05D000517 2.5e-08 62.0 67 50.7
vmacro17043 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 2.5e-08 62.0 69 56.5
CsaV3_6G033730 Cucumis sativus L. HOM05D000634 ORTHO05D000517 4.3e-08 61.2 64 53.1
Phvul.003G040400 Phaseolus vulgaris HOM05D000634 ORTHO05D000517 4.3e-08 61.2 63 55.6
MELO3C011415.2 Cucumis melo HOM05D000634 ORTHO05D000517 5.7e-08 60.8 64 51.6
Sabra10G0119200 Salix brachista HOM05D000634 ORTHO05D000517 5.7e-08 60.8 66 50.0
Glyma.06G131900 Glycine max HOM05D000634 ORTHO05D000517 7.4e-08 60.5 63 54.0
Sed0015925 Sechium edule HOM05D000634 ORTHO05D000517 7.4e-08 60.5 68 47.1
Nitab4.5_0000231g0040 Nicotiana tabacum HOM05D000634 ORTHO05D000517 9.7e-08 60.1 66 51.5
Potri.010G156900 Populus trichocarpa HOM05D000634 ORTHO05D000517 9.7e-08 60.1 66 51.5
Nitab4.5_0007734g0010 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.3e-07 59.7 66 50.0
THA.LOC104808516 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 1.7e-07 59.3 69 50.7
CANSAT64G0085 Cannabis sativa HOM05D000634 ORTHO05D000517 2.2e-07 58.9 66 48.5
DCAR_030048 Daucus carota HOM05D000634 ORTHO05D000517 2.2e-07 58.9 67 49.3
Lalb_Chr04g0255541 Lupinus albus HOM05D000634 ORTHO05D000517 2.8e-07 58.5 63 54.0
MSTRG.2301 Avicennia marina HOM05D000634 ORTHO05D000517 3.7e-07 58.2 67 44.8
Sc11g0002550 Simmondsia chinensis HOM05D000634 ORTHO05D000517 4.8e-07 57.8 68 44.1
Zm00001eb214730 Zea mays HOM05D000634 ORTHO05D000517 4.8e-07 57.8 68 50.0
Cpa.g.sc1.152 Carica papaya HOM05D000634 ORTHO05D000517 6.3e-07 57.4 66 47.0
Peaxi162Scf00175g00523 Petunia axillaris HOM05D000634 ORTHO05D000517 8.2e-07 57.0 66 48.5
arahy.Tifrunner.gnm1.ann1.I71KET Arachis hypogaea HOM05D000634 ORTHO05D000517 1.1e-06 56.6 61 52.5
MBI19_g06122_MAGBIO Magnolia biondii HOM05D000634 ORTHO05D000517 1.8e-06 55.8 67 49.3
Lsat_1_v5_gn_8_45940 Lactuca sativa HOM05D000634 ORTHO05D000517 5.3e-06 54.3 62 50.0
Lj2g0012271 Lotus japonicus HOM05D000634 ORTHO05D000517 5.3e-06 54.3 63 52.4
arahy.Tifrunner.gnm1.ann1.G02MLL Arachis hypogaea HOM05D000634 ORTHO05D000517 9.1e-06 53.5 63 50.8
Oeu031532.1 Olea europaea HOM05D000634 ORTHO05D000517 9.1e-06 53.5 68 48.5
Zm00001eb057570 Zea mays HOM05D000634 ORTHO05D000517 9.1e-06 53.5 67 47.8


User provided reference genes

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