Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2489 Fragaria x ananassa HOM05D002608 ORTHO05D035563 4.9e-98 361.3 203 100.0
RcHm_v2.0_Chr3g0456551 Rosa chinensis HOM05D002608 ORTHO05D003838 3.4e-19 99.4 125 52.0
FvH4_6g07021 Fragaria vesca HOM05D002608 ORTHO05D003838 7.7e-19 98.2 125 51.2
FAN14G0019 Fragaria x ananassa HOM05D002608 ORTHO05D003838 7.7e-19 98.2 125 51.2
FAN05G0606 Fragaria x ananassa HOM05D002608 ORTHO05D003838 1.7e-18 97.1 125 50.4
FAN02G0527 Fragaria x ananassa HOM05D002608 ORTHO05D003838 1.9e-17 93.6 122 50.0
Potri.013G011900 Populus trichocarpa HOM05D002608 ORTHO05D003838 7.2e-17 91.7 135 45.2
Sabra13G0010400 Salix brachista HOM05D002608 ORTHO05D003838 1.2e-16 90.9 125 47.2
Thecc.05G318700 Theobroma cacao HOM05D002608 ORTHO05D003838 1.2e-16 90.9 125 45.6
Potri.005G021400 Populus trichocarpa HOM05D002608 ORTHO05D003838 2.1e-16 90.1 135 44.4
Duzib106G0606 Durio zibethinus HOM05D002608 ORTHO05D003838 7.9e-16 88.2 125 45.6
Sabra05G0027400 Salix brachista HOM05D002608 ORTHO05D003838 7.9e-16 88.2 135 44.4
Prupe.6G317100 Prunus persica HOM05D002608 ORTHO05D003838 1.0e-15 87.8 125 45.6
Manes.09G174300 Manihot esculenta HOM05D002608 ORTHO05D003838 1.4e-15 87.4 125 45.6
Manes.08G114400 Manihot esculenta HOM05D002608 ORTHO05D003838 1.8e-15 87.0 125 46.4
CANSAT56G4271 Cannabis sativa HOM05D002608 ORTHO05D003838 3.0e-15 86.3 131 43.5
Gohir.D08G224200 Gossypium hirsutum HOM05D002608 ORTHO05D003838 3.0e-15 86.3 125 43.2
MD04G1196800 Malus domestica HOM05D002608 ORTHO05D003838 3.0e-15 86.3 125 45.6
MD12G1209700 Malus domestica HOM05D002608 ORTHO05D003838 3.0e-15 86.3 125 45.6
TWI56G0709 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 3.0e-15 86.3 125 45.6
Thecc.01G130800 Theobroma cacao HOM05D002608 ORTHO05D003838 5.1e-15 85.5 125 45.6
GSVIVG01031192001 Vitis vinifera HOM05D002608 ORTHO05D003838 5.1e-15 85.5 122 46.7
Gorai.004G238100 Gossypium raimondii HOM05D002608 ORTHO05D003838 8.8e-15 84.7 125 42.4
QL03p017837 Quercus lobata HOM05D002608 ORTHO05D003838 8.8e-15 84.7 141 41.1
QL93p2009_0049 Quercus lobata HOM05D002608 ORTHO05D003838 8.8e-15 84.7 141 41.1
Sp6g06010 Schrenkiella parvula HOM05D002608 ORTHO05D003838 8.8e-15 84.7 125 45.6
Gohir.A11G268500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 2.0e-14 83.6 125 42.4
BcaC04g21147 Brassica carinata HOM05D002608 ORTHO05D003838 2.5e-14 83.2 125 44.0
A09p27650 Brassica napus HOM05D002608 ORTHO05D003838 2.5e-14 83.2 125 44.0
C09p35000 Brassica napus HOM05D002608 ORTHO05D003838 2.5e-14 83.2 125 44.0
BolC9t56346H Brassica oleracea HOM05D002608 ORTHO05D003838 2.5e-14 83.2 125 44.0
BraA09t38334Z Brassica rapa HOM05D002608 ORTHO05D003838 2.5e-14 83.2 125 44.0
FvH4_4g19950 Fragaria vesca HOM05D002608 ORTHO05D035563 3.3e-14 82.8 95 60.0
Aa31LG6G6570 Aethionema arabicum HOM05D002608 ORTHO05D003838 4.3e-14 82.4 123 45.5
Aa31LG9G10810 Aethionema arabicum HOM05D002608 ORTHO05D003838 4.3e-14 82.4 123 43.9
COL.COLO4_03801 Corchorus olitorius HOM05D002608 ORTHO05D003838 4.3e-14 82.4 174 39.7
BcaB01g01651 Brassica carinata HOM05D002608 ORTHO05D003838 7.4e-14 81.6 125 45.6
TWI36G0315 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 7.4e-14 81.6 173 37.0
AL6G45870 Arabidopsis lyrata HOM05D002608 ORTHO05D003838 9.7e-14 81.3 125 44.8
TWI12G0370 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 9.7e-14 81.3 125 42.4
Atru.chr2.118 Acer truncatum HOM05D002608 ORTHO05D003838 1.7e-13 80.5 125 44.0
Lj1g0021618 Lotus japonicus HOM05D002608 ORTHO05D003838 2.2e-13 80.1 125 42.4
Cfa006672 Carpinus fangiana HOM05D002608 ORTHO05D003838 2.8e-13 79.7 125 41.6
BcaB01g02695 Brassica carinata HOM05D002608 ORTHO05D003838 3.7e-13 79.3 125 44.0
Haze_04099 Corylus avellana HOM05D002608 ORTHO05D003838 3.7e-13 79.3 141 39.7
DCAR_003377 Daucus carota HOM05D002608 ORTHO05D003838 4.8e-13 79.0 125 45.6
THA.LOC104814584 Tarenaya hassleriana HOM05D002608 ORTHO05D003838 4.8e-13 79.0 125 42.4
TAR374G0864 Trochodendron aralioides HOM05D002608 ORTHO05D003838 4.8e-13 79.0 125 43.2
BcaB05g23828 Brassica carinata HOM05D002608 ORTHO05D003838 6.3e-13 78.6 125 43.2
Hund12489 Selenicereus undatus HOM05D002608 ORTHO05D003838 6.3e-13 78.6 125 45.6
BcaC01g04630 Brassica carinata HOM05D002608 ORTHO05D003838 8.2e-13 78.2 125 43.2
BcaC03g16352 Brassica carinata HOM05D002608 ORTHO05D003838 8.2e-13 78.2 124 43.5
A02p26260 Brassica napus HOM05D002608 ORTHO05D003838 8.2e-13 78.2 124 43.5
C02p41770 Brassica napus HOM05D002608 ORTHO05D003838 8.2e-13 78.2 124 43.5
BolC2t10192H Brassica oleracea HOM05D002608 ORTHO05D003838 8.2e-13 78.2 124 43.5
BolC3t15861H Brassica oleracea HOM05D002608 ORTHO05D003838 8.2e-13 78.2 125 43.2
BraA02t07627Z Brassica rapa HOM05D002608 ORTHO05D003838 8.2e-13 78.2 124 43.5
Ca_08783_v3 Cicer arietinum L. HOM05D002608 ORTHO05D003838 8.2e-13 78.2 122 43.4
Dinv24411 Davidia involucrata HOM05D002608 ORTHO05D003838 8.2e-13 78.2 125 44.8
C03p35460 Brassica napus HOM05D002608 ORTHO05D003838 1.4e-12 77.4 125 43.2
AUR62005245 Chenopodium quinoa HOM05D002608 ORTHO05D003838 1.4e-12 77.4 125 43.2
TAR383G0809 Trochodendron aralioides HOM05D002608 ORTHO05D003838 1.4e-12 77.4 125 43.2
Medtr7g099920 Medicago truncatula HOM05D002608 ORTHO05D003838 1.8e-12 77.0 124 41.9
Sc15g0004560 Simmondsia chinensis HOM05D002608 ORTHO05D003838 1.8e-12 77.0 125 41.6
Sopen09g005200 Solanum pennellii HOM05D002608 ORTHO05D003838 1.8e-12 77.0 135 41.5
A03p29350 Brassica napus HOM05D002608 ORTHO05D003838 2.4e-12 76.6 124 42.7
BraA03t12132Z Brassica rapa HOM05D002608 ORTHO05D003838 2.4e-12 76.6 124 42.7
PGSC0003DMG400008926 Solanum tuberosum HOM05D002608 ORTHO05D003838 2.4e-12 76.6 134 41.8
BcaNung03267 Brassica carinata HOM05D002608 ORTHO05D003838 3.1e-12 76.3 157 38.9
AUR62000719 Chenopodium quinoa HOM05D002608 ORTHO05D003838 3.1e-12 76.3 125 42.4
Carub.0006s3036 Capsella rubella HOM05D002608 ORTHO05D003838 4.1e-12 75.9 120 43.3
ClCG03G006160 Citrullus lanatus HOM05D002608 ORTHO05D003838 4.1e-12 75.9 125 42.4
Thhalv10028395m.g Eutrema salsugineum HOM05D002608 ORTHO05D003838 4.1e-12 75.9 124 41.9
Lalb_Chr20g0113231 Lupinus albus HOM05D002608 ORTHO05D003838 4.1e-12 75.9 124 43.5
Medtr7g098840 Medicago truncatula HOM05D002608 ORTHO05D017777 4.1e-12 75.9 149 38.9
Solyc09g010460.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 4.1e-12 75.9 136 41.2
TAR365G0313 Trochodendron aralioides HOM05D002608 ORTHO05D003838 4.1e-12 75.9 125 42.4
BolC7t45756H Brassica oleracea HOM05D002608 ORTHO05D003838 6.9e-12 75.1 146 40.4
BraA03t14483Z Brassica rapa HOM05D002608 ORTHO05D003838 6.9e-12 75.1 146 39.7
CAN.G97.14 Capsicum annuum HOM05D002608 ORTHO05D003838 6.9e-12 75.1 120 44.2
Cc06_g02900 Coffea canephora HOM05D002608 ORTHO05D003838 6.9e-12 75.1 124 41.9
Glyma.03G172200 Glycine max HOM05D002608 ORTHO05D003838 6.9e-12 75.1 122 43.4
Hma1.2p1_0472F.1_g159760 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 9.1e-12 74.7 125 40.8
Lj2A99G56 Lonicera japonica HOM05D002608 ORTHO05D003838 9.1e-12 74.7 141 40.4
CSS0020825 Camellia sinensis var. sinensis HOM05D002608 ORTHO05D003838 1.2e-11 74.3 125 44.0
Sc02g0009020 Simmondsia chinensis HOM05D002608 ORTHO05D003838 1.2e-11 74.3 128 38.3
Rhsim05G0135800 Rhododendron simsii HOM05D002608 ORTHO05D003838 1.5e-11 73.9 123 43.1
Ciclev10000154m.g Citrus clementina HOM05D002608 ORTHO05D003838 2.0e-11 73.6 173 35.3
COL.COLO4_35714 Corchorus olitorius HOM05D002608 ORTHO05D003838 2.0e-11 73.6 121 41.3
Phvul.001G169900 Phaseolus vulgaris HOM05D002608 ORTHO05D003838 2.0e-11 73.6 123 42.3
AT4G11420 Arabidopsis thaliana HOM05D002608 ORTHO05D003838 2.6e-11 73.2 121 41.3
Lsat_1_v5_gn_1_55601 Lactuca sativa HOM05D002608 ORTHO05D003838 2.6e-11 73.2 124 38.7
Lsat_1_v5_gn_7_67461 Lactuca sativa HOM05D002608 ORTHO05D003838 2.6e-11 73.2 125 39.2
Peaxi162Scf00039g01224 Petunia axillaris HOM05D002608 ORTHO05D003838 2.6e-11 73.2 171 36.3
Psat3g048960 Pisum sativum HOM05D002608 ORTHO05D003838 2.6e-11 73.2 160 37.5
SHI15014 Sapria himalayana HOM05D002608 ORTHO05D003838 2.6e-11 73.2 123 42.3
VMungo1383G2288 Vigna mungo HOM05D002608 ORTHO05D003838 2.6e-11 73.2 122 42.6
Ah.04g154230 Amaranthus hybridus HOM05D002608 ORTHO05D013420 3.4e-11 72.8 125 40.8
BcaNung01455 Brassica carinata HOM05D002608 ORTHO05D003838 3.4e-11 72.8 146 39.7
Ca_08785_v3 Cicer arietinum L. HOM05D002608 ORTHO05D003838 3.4e-11 72.8 117 42.7
C07p52590 Brassica napus HOM05D002608 ORTHO05D000101 4.5e-11 72.4 157 37.6
Carub.0007s1783 Capsella rubella HOM05D002608 ORTHO05D013040 4.5e-11 72.4 141 41.8
DCAR_022132 Daucus carota HOM05D002608 ORTHO05D003838 4.5e-11 72.4 155 41.3
Nitab4.5_0002077g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 4.5e-11 72.4 124 41.9
Oeu049216.1 Olea europaea HOM05D002608 ORTHO05D003838 4.5e-11 72.4 125 40.8
HanXRQChr09g0247971 Helianthus annuus HOM05D002608 ORTHO05D003838 5.9e-11 72.0 133 36.8
Nitab4.5_0003267g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 7.7e-11 71.6 109 43.1
ECA247G1225 Erigeron canadensis HOM05D002608 ORTHO05D003838 1.0e-10 71.2 135 35.6
FAN12G4026 Fragaria x ananassa HOM05D002608 ORTHO05D035563 1.0e-10 71.2 52 75.0
ClCG03G017600 Citrullus lanatus HOM05D002608 ORTHO05D003838 1.3e-10 70.9 125 40.8
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 1.3e-10 70.9 131 37.4
SGA_v2.0_scaffold92G28166 Striga asiatica HOM05D002608 ORTHO05D003838 1.3e-10 70.9 123 39.8
CARHR255150 Cardamine hirsuta HOM05D002608 ORTHO05D003838 1.7e-10 70.5 178 35.4
CiPaw.10G143500 Carya illinoinensis HOM05D002608 ORTHO05D003838 1.7e-10 70.5 123 40.7
arahy.Tifrunner.gnm1.ann1.6UH7HR Arachis hypogaea HOM05D002608 ORTHO05D003838 2.2e-10 70.1 124 40.3
arahy.Tifrunner.gnm1.ann1.PFNK2V Arachis hypogaea HOM05D002608 ORTHO05D003838 2.2e-10 70.1 124 40.3
MSTRG.18039 Avicennia marina HOM05D002608 ORTHO05D003838 2.2e-10 70.1 171 36.3
CsaV3_1G037240 Cucumis sativus L. HOM05D002608 ORTHO05D003838 2.2e-10 70.1 125 41.6
Hund07119 Selenicereus undatus HOM05D002608 ORTHO05D003838 2.2e-10 70.1 130 38.5
Actinidia21508 Actinidia chinensis HOM05D002608 ORTHO05D003838 2.9e-10 69.7 125 39.2
Cpa.g.sc48.127 Carica papaya HOM05D002608 ORTHO05D003838 2.9e-10 69.7 179 37.4
Medtr7g087180 Medicago truncatula HOM05D002608 ORTHO05D003838 2.9e-10 69.7 113 47.8
Nn2g12763 Nelumbo nucifera HOM05D002608 ORTHO05D003838 2.9e-10 69.7 118 40.7
Cfa017421 Carpinus fangiana HOM05D002608 ORTHO05D003838 3.8e-10 69.3 125 40.0
SalBow6G5981 Salvia bowleyana HOM05D002608 ORTHO05D003838 3.8e-10 69.3 123 39.8
DCAR_014838 Daucus carota HOM05D002608 ORTHO05D003838 5.0e-10 68.9 109 42.2
Migut.H01296 Erythranthe guttata HOM05D002608 ORTHO05D003838 5.0e-10 68.9 134 39.6
EL10Ac4g09869 Beta vulgaris HOM05D002608 ORTHO05D003838 6.5e-10 68.6 109 45.0
Hma1.2p1_1441F.1_g283600 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 6.5e-10 68.6 125 40.8
HanXRQChr14g0452151 Helianthus annuus HOM05D002608 ORTHO05D003838 8.5e-10 68.2 130 36.2
Glyma.19G173100 Glycine max HOM05D002608 ORTHO05D003838 1.1e-09 67.8 119 40.3
MELO3C002822.2 Cucumis melo HOM05D002608 ORTHO05D003838 1.4e-09 67.4 140 38.6
CsaV3_1G037230 Cucumis sativus L. HOM05D002608 ORTHO05D003838 1.9e-09 67.0 121 39.7
ECA240G3079 Erigeron canadensis HOM05D002608 ORTHO05D003838 2.5e-09 66.6 135 34.8
QL05p010646 Quercus lobata HOM05D002608 ORTHO05D003838 2.5e-09 66.6 124 40.3
QL07p047431 Quercus lobata HOM05D002608 ORTHO05D003838 2.5e-09 66.6 124 40.3
CiPaw.07G025500 Carya illinoinensis HOM05D002608 ORTHO05D003838 4.2e-09 65.9 123 36.6
Eucgr.H03271 Eucalyptus grandis HOM05D002608 ORTHO05D003838 5.5e-09 65.5 105 42.9
Nitab4.5_0000202g0170 Nicotiana tabacum HOM05D002608 ORTHO05D003838 5.5e-09 65.5 123 38.2
PGR142G3882 Punica granatum HOM05D002608 ORTHO05D003838 5.5e-09 65.5 163 36.2
unitig_899.g15197 Utricularia gibba HOM05D002608 ORTHO05D003838 5.5e-09 65.5 121 38.8
Nitab4.5_0000216g0080 Nicotiana tabacum HOM05D002608 ORTHO05D003838 7.2e-09 65.1 123 35.8
FAN12G0216 Fragaria x ananassa HOM05D002608 ORTHO05D013420 9.4e-09 64.7 61 55.7
PGR031G1858 Punica granatum HOM05D002608 ORTHO05D003838 9.4e-09 64.7 144 36.1
FAN01G2273 Fragaria x ananassa HOM05D002608 ORTHO05D013420 1.2e-08 64.3 58 56.9
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 1.2e-08 64.3 58 56.9
PSO170G1119 Papaver somniferum HOM05D002608 ORTHO05D003838 1.6e-08 63.9 124 35.5
PSO528G0014 Papaver somniferum HOM05D002608 ORTHO05D003838 2.1e-08 63.5 154 33.8
CsaV3_1G037250 Cucumis sativus L. HOM05D002608 ORTHO05D003838 2.7e-08 63.2 125 39.2
Sed0023948 Sechium edule HOM05D002608 ORTHO05D003838 2.7e-08 63.2 135 33.3
Gorai.007G300600 Gossypium raimondii HOM05D002608 ORTHO05D003838 3.6e-08 62.8 125 37.6
Haze_20749 Corylus avellana HOM05D002608 ORTHO05D003838 4.7e-08 62.4 125 37.6
SalBow2G2051 Salvia bowleyana HOM05D002608 ORTHO05D003838 4.7e-08 62.4 124 37.1
AUR62026623 Chenopodium quinoa HOM05D002608 ORTHO05D003838 7.9e-08 61.6 125 38.4
Lalb_Chr01g0019231 Lupinus albus HOM05D002608 ORTHO05D003838 1.4e-07 60.8 101 41.6
PGSC0003DMG400010999 Solanum tuberosum HOM05D002608 ORTHO05D003838 1.4e-07 60.8 124 37.1
Lsat_1_v5_gn_9_123961 Lactuca sativa HOM05D002608 ORTHO05D003838 1.8e-07 60.5 154 31.8
Gohir.D11G278500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 3.9e-07 59.3 125 36.0
Os01g0120800 Oryza sativa ssp. japonica HOM05D002608 ORTHO05D003838 5.1e-07 58.9 185 30.3
Gohir.A08G207600 Gossypium hirsutum HOM05D002608 ORTHO05D003838 6.7e-07 58.5 173 33.5
CiPaw.09G189400 Carya illinoinensis HOM05D002608 ORTHO05D003838 8.8e-07 58.2 123 38.2
PSO357G0420 Papaver somniferum HOM05D002608 ORTHO05D003838 8.8e-07 58.2 119 35.3
Peaxi162Scf01093g00011 Petunia axillaris HOM05D002608 ORTHO05D003838 8.8e-07 58.2 142 33.8
MBI01_g01189_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 1.1e-06 57.8 124 35.5
Duzib177G0789 Durio zibethinus HOM05D002608 ORTHO05D003838 1.5e-06 57.4 125 36.0
Sopen10g034110 Solanum pennellii HOM05D002608 ORTHO05D003838 1.5e-06 57.4 124 36.3
Ah.13g074150 Amaranthus hybridus HOM05D002608 ORTHO05D021193 3.3e-06 56.2 125 36.8
Migut.F01887 Erythranthe guttata HOM05D002608 ORTHO05D003838 4.4e-06 55.8 137 35.8
Zm00001eb121480 Zea mays HOM05D002608 ORTHO05D003838 4.4e-06 55.8 125 33.6
TPR.G7841 Trifolium pratense HOM05D002608 ORTHO05D003838 5.7e-06 55.5 139 36.7
Zm00001eb337210 Zea mays HOM05D002608 ORTHO05D003838 5.7e-06 55.5 125 33.6
A03p54220 Brassica napus HOM05D002608 ORTHO05D003838 7.4e-06 55.1 157 33.1
Solyc10g084670.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 7.4e-06 55.1 124 36.3


User provided reference genes

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