Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-156 556.2 289 100.0
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 7.0e-151 537.3 287 97.6
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.6e-150 536.2 287 97.6
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.6e-150 534.6 287 97.6
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 9.5e-140 500.4 279 92.8
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.7e-112 409.8 300 72.7
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.0e-109 400.6 294 73.5
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 4.0e-106 388.7 264 75.0
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.5e-105 386.7 283 71.4
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.0e-105 386.3 292 70.2
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 4.5e-105 385.2 277 72.6
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.9e-104 382.5 298 67.8
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 2.9e-104 382.5 298 68.8
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 3.8e-104 382.1 292 70.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.1e-103 380.6 256 77.0
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.4e-103 380.2 292 69.9
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.4e-103 380.2 298 67.8
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.2e-103 379.0 285 71.2
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 3.2e-103 379.0 257 73.9
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 7.1e-103 377.9 287 71.4
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.1e-103 377.9 264 74.2
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 9.3e-103 377.5 296 68.6
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.6e-102 376.7 254 75.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 6.0e-102 374.8 252 74.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.0e-101 374.0 282 69.1
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.3e-101 373.6 279 71.3
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.8e-101 373.2 248 75.8
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.1e-100 370.5 298 67.4
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.9e-100 369.8 296 66.2
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.5e-100 369.4 263 71.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.5e-100 369.4 263 71.9
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.5e-100 369.4 286 67.8
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.3e-100 368.6 249 74.3
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.6e-100 368.2 257 73.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 7.4e-100 367.9 249 74.3
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.3e-99 367.1 284 70.4
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.3e-99 367.1 273 71.1
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 2.1e-99 366.3 273 72.2
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 2.1e-99 366.3 298 66.4
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.1e-99 366.3 286 67.8
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 8.2e-99 364.4 260 72.3
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.8e-98 363.2 282 70.6
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 2.6e-97 359.4 259 71.4
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 2.6e-97 359.4 237 74.3
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.4e-97 359.0 285 69.5
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 4.5e-97 358.6 283 68.2
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.3e-96 357.1 246 73.2
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.7e-96 356.7 229 77.3
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.9e-96 355.9 306 63.7
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.8e-96 355.5 281 69.0
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 3.8e-96 355.5 275 69.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 4.9e-96 355.1 283 69.3
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.1e-95 354.0 283 68.6
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.5e-95 352.8 295 64.7
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.2e-95 352.4 240 71.7
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.2e-95 352.4 259 71.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 4.2e-95 352.1 289 68.2
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 9.3e-95 350.9 289 67.5
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 9.3e-95 350.9 277 66.4
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 9.3e-95 350.9 277 65.7
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.6e-94 350.1 302 64.6
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 4.6e-94 348.6 283 67.1
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 6.0e-94 348.2 266 66.5
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 7.9e-94 347.8 287 64.8
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.3e-93 347.1 278 66.9
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.8e-93 346.7 245 71.0
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 3.0e-93 345.9 287 63.4
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.0e-93 345.9 282 67.0
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.1e-93 345.1 248 69.8
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 8.7e-93 344.4 282 67.7
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.1e-92 344.0 284 66.5
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.5e-92 342.8 333 58.9
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 4.3e-92 342.0 241 70.5
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 4.3e-92 342.0 235 71.1
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 4.3e-92 342.0 247 68.4
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.4e-92 341.3 240 68.3
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 9.7e-92 340.9 247 68.0
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 9.7e-92 340.9 270 65.2
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.6e-91 340.1 242 71.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 1.6e-91 340.1 270 66.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.8e-91 339.3 259 67.2
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 3.7e-91 339.0 278 64.4
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 8.2e-91 337.8 269 65.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.4e-90 337.0 284 65.5
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.4e-90 336.3 292 64.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.1e-90 335.9 272 65.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.1e-90 335.9 219 74.4
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.1e-90 335.9 241 70.5
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.2e-88 329.7 244 66.8
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 8.8e-85 317.8 214 74.8
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.5e-84 317.0 279 60.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.7e-83 312.4 263 63.5
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 8.2e-83 311.2 253 67.2
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 8.2e-83 311.2 230 66.1
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.4e-82 310.5 275 60.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 9.1e-82 307.8 239 63.6
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 2.0e-81 306.6 256 64.5
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 5.9e-81 305.1 259 65.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 7.7e-81 304.7 236 68.6
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.9e-79 300.1 204 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.8e-77 293.5 239 62.3
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.0e-76 290.0 208 67.8
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 3.8e-72 275.8 244 57.8
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.8e-69 266.9 206 65.5
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 3.9e-69 265.8 261 56.3
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.2e-65 254.2 190 70.5
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.9e-63 246.9 273 53.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.2e-59 233.4 147 77.6
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.3e-48 196.8 149 66.4
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 4.7e-46 189.1 218 48.2
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 6.1e-46 188.7 232 44.8
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 6.1e-38 162.2 214 40.2
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.9e-35 153.3 161 57.8
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 7.8e-33 145.2 86 81.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 5.8e-28 129.0 137 52.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.1e-25 120.6 67 91.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.6e-23 112.5 66 80.3
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.8e-22 110.2 111 57.7
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 6.8e-21 105.5 81 61.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.7e-19 100.9 68 64.7
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.7e-19 99.8 56 82.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 6.6e-16 89.0 63 61.9
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 8.6e-16 88.6 63 69.8
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 2.1e-14 84.0 137 43.1
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 3.6e-14 83.2 51 76.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 8.1e-14 82.0 170 36.5
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.1e-13 81.6 83 61.4
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 3.1e-13 80.1 49 75.5
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 7.6e-12 75.5 53 67.9
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.3e-11 74.7 103 42.7
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 3.8e-11 73.2 47 72.3
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 4.6e-09 66.2 43 72.1
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 3.6e-06 56.6 36 75.0
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 6.2e-06 55.8 81 42.0


User provided reference genes

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