Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2473 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.0e-51 206.5 103 100.0
FAN07G0027 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.9e-45 185.7 99 94.9
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 3.5e-44 181.4 99 90.9
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.1e-25 117.1 105 61.0
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.1e-25 117.1 105 61.0
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.1e-25 117.1 105 61.0
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.0e-24 114.8 105 60.0
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 2.0e-23 112.5 105 57.1
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.0e-23 112.5 105 57.1
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.4e-23 111.3 105 57.1
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.9e-23 110.2 105 56.2
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-22 109.8 105 55.2
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 3.8e-22 108.2 105 55.2
FAN06G1687 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.8e-22 108.2 105 55.2
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.9e-22 107.8 106 57.5
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 8.4e-22 107.1 105 54.3
FAN09G3462 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.1e-21 106.7 105 58.1
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.4e-21 106.3 105 55.2
FAN10G2401 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-20 103.2 87 58.6
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 3.9e-19 98.2 106 50.0
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 1.8e-16 89.4 104 45.2
FAN01G0002 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.0e-16 88.2 102 50.0
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 4.0e-16 88.2 104 45.2
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 1.5e-15 86.3 105 42.9
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 2.6e-15 85.5 104 45.2
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 2.6e-15 85.5 108 43.5
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 5.8e-15 84.3 104 46.2
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 5.8e-15 84.3 104 45.2
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 7.6e-15 84.0 105 45.7
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 7.6e-15 84.0 104 47.1
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.9e-15 83.6 101 46.5
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 9.9e-15 83.6 104 44.2
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 2.2e-14 82.4 101 46.5
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-14 82.4 101 46.5
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-14 82.4 101 46.5
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 2.9e-14 82.0 104 44.2
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 2.9e-14 82.0 100 45.0
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 3.8e-14 81.6 106 43.4
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 6.4e-14 80.9 100 44.0
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 6.4e-14 80.9 104 40.4
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 6.4e-14 80.9 101 46.5
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 6.4e-14 80.9 105 43.8
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 8.4e-14 80.5 104 43.3
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 1.1e-13 80.1 104 41.3
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 1.1e-13 80.1 106 44.3
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.9e-13 79.3 110 44.5
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 2.4e-13 79.0 105 40.0
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 2.4e-13 79.0 104 41.3
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.4e-13 79.0 105 38.1
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.4e-13 79.0 105 41.9
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.4e-13 79.0 105 41.9
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.4e-13 79.0 104 42.3
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 2.4e-13 79.0 104 41.3
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 3.2e-13 78.6 104 46.2
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 3.2e-13 78.6 104 40.4
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 3.2e-13 78.6 112 37.5
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 4.2e-13 78.2 104 43.3
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 4.2e-13 78.2 100 43.0
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 4.2e-13 78.2 104 40.4
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 7.1e-13 77.4 105 39.0
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 7.1e-13 77.4 104 44.2
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 9.3e-13 77.0 104 39.4
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 9.3e-13 77.0 102 39.2
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.2e-12 76.6 104 40.4
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.6e-12 76.3 110 39.1
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 2.1e-12 75.9 104 42.3
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 2.7e-12 75.5 104 40.4
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 2.7e-12 75.5 104 40.4
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 2.7e-12 75.5 109 37.6
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 2.7e-12 75.5 87 47.1
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 3.5e-12 75.1 105 39.0
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 3.5e-12 75.1 110 37.3
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 3.5e-12 75.1 110 39.1
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 4.6e-12 74.7 104 41.3
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 4.6e-12 74.7 104 41.3
Dinv05150 Davidia involucrata HOM05D002727 ORTHO05D002856 4.6e-12 74.7 104 39.4
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 4.6e-12 74.7 109 41.3
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 6.0e-12 74.3 106 40.6
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 7.8e-12 73.9 105 38.1
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 1.0e-11 73.6 104 39.4
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 1.0e-11 73.6 106 43.4
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 1.0e-11 73.6 88 42.0
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 1.3e-11 73.2 109 39.4
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 1.3e-11 73.2 109 36.7
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 1.7e-11 72.8 104 39.4
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.3e-11 72.4 104 42.3
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 2.3e-11 72.4 101 36.6
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 2.3e-11 72.4 87 41.4
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 2.3e-11 72.4 108 40.7
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 3.0e-11 72.0 104 38.5
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 3.0e-11 72.0 100 40.0
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 3.0e-11 72.0 104 40.4
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 3.0e-11 72.0 104 43.3
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 6.6e-11 70.9 104 41.3
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 6.6e-11 70.9 107 37.4
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 8.7e-11 70.5 108 39.8
Carub.0007s3456 Capsella rubella HOM05D002727 ORTHO05D002856 8.7e-11 70.5 105 38.1
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 8.7e-11 70.5 108 38.0
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 8.7e-11 70.5 106 40.6
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 1.1e-10 70.1 104 38.5
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 1.1e-10 70.1 107 39.3
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 1.1e-10 70.1 110 36.4
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 1.5e-10 69.7 105 40.0
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 1.5e-10 69.7 105 36.2
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 1.5e-10 69.7 104 38.5
MD16G1030000 Malus domestica HOM05D002727 ORTHO05D002856 1.9e-10 69.3 93 46.2
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 2.5e-10 68.9 109 36.7
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 3.3e-10 68.6 104 38.5
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 3.3e-10 68.6 106 33.0
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 3.3e-10 68.6 107 39.3
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 4.3e-10 68.2 109 33.0
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 4.3e-10 68.2 99 39.4
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 5.6e-10 67.8 103 40.8
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 7.3e-10 67.4 101 43.6
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 9.6e-10 67.0 105 38.1
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 9.6e-10 67.0 106 39.6
Potri.017G111600 Populus trichocarpa HOM05D002727 ORTHO05D002856 9.6e-10 67.0 87 41.4
Psat3g178240 Pisum sativum HOM05D002727 ORTHO05D002856 1.3e-09 66.6 95 34.7
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.3e-09 66.6 104 38.5
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-09 66.2 104 36.5
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 1.6e-09 66.2 108 37.0
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.6e-09 66.2 107 37.4
Atru.chr11.407 Acer truncatum HOM05D002727 ORTHO05D002856 2.1e-09 65.9 105 39.0
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 2.1e-09 65.9 108 34.3
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 2.1e-09 65.9 106 33.0
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 2.1e-09 65.9 106 33.0
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 2.8e-09 65.5 104 41.3
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 3.6e-09 65.1 104 33.7
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 4.8e-09 64.7 118 33.1
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 6.2e-09 64.3 90 43.3
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 1.1e-08 63.5 102 33.3
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 1.4e-08 63.2 101 33.7
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 1.4e-08 63.2 104 38.5
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 1.4e-08 63.2 106 31.1
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 1.8e-08 62.8 105 38.1
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 3.1e-08 62.0 96 35.4
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 3.1e-08 62.0 104 38.5
Cpa.g.sc65.111 Carica papaya HOM05D002727 ORTHO05D002856 4.0e-08 61.6 104 34.6
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 5.3e-08 61.2 107 32.7
Ca_24293_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 6.9e-08 60.8 99 33.3
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 1.2e-07 60.1 106 37.7
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 1.2e-07 60.1 106 37.7
CARHR253380 Cardamine hirsuta HOM05D002727 ORTHO05D002856 1.2e-07 60.1 106 33.0
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 1.5e-07 59.7 101 38.6
AUR62014130 Chenopodium quinoa HOM05D002727 ORTHO05D002856 2.0e-07 59.3 115 38.3
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 3.4e-07 58.5 112 33.0
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 9.9e-07 57.0 115 38.3
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 1.3e-06 56.6 109 37.6
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 2.9e-06 55.5 103 37.9
Aqoxy168s002 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 3.8e-06 55.1 114 35.1
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 3.8e-06 55.1 113 35.4
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 6.4e-06 54.3 103 36.9
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 6.4e-06 54.3 104 37.5


User provided reference genes

Program Settings