Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.6e-128 461.1 254 100.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.8e-127 458.8 254 99.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.1e-119 432.6 279 89.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 5.1e-105 384.8 254 84.3
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 6.3e-87 324.7 254 71.7
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.0e-81 307.4 248 66.9
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 3.5e-77 292.4 245 66.1
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 5.9e-77 291.6 248 64.5
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 8.5e-76 287.7 254 65.4
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 6.1e-74 281.6 258 62.8
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 4.0e-73 278.9 258 61.6
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 6.8e-73 278.1 239 63.6
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 9.8e-72 274.2 256 62.1
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.3e-71 273.9 241 61.4
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.3e-71 273.9 242 60.7
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 3.1e-70 269.2 240 60.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 4.1e-70 268.9 247 59.9
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 5.4e-70 268.5 245 59.2
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 9.1e-70 267.7 241 60.2
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.6e-69 266.9 251 59.8
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.6e-69 266.9 241 59.8
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.6e-69 266.9 245 60.8
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 5.9e-69 265.0 255 59.2
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.0e-68 264.2 228 64.9
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.3e-68 263.8 248 58.1
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 5.0e-68 261.9 247 61.1
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.1e-67 260.8 224 61.6
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.1e-67 260.8 241 59.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.5e-67 260.4 243 58.4
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.5e-67 259.6 257 58.8
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 4.2e-67 258.8 230 62.6
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.2e-67 258.8 229 58.1
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.2e-66 257.3 236 58.9
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.2e-66 257.3 240 56.7
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.7e-66 255.4 234 59.4
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.0e-65 254.2 245 58.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.3e-65 253.1 245 57.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.3e-65 253.1 255 57.6
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.3e-65 253.1 246 56.9
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 2.3e-65 253.1 245 58.4
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 3.0e-65 252.7 250 56.8
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 4.0e-65 252.3 234 59.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.0e-65 252.3 234 59.4
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.2e-65 251.9 241 57.3
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.8e-65 251.5 241 57.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 8.8e-65 251.1 241 58.1
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 8.8e-65 251.1 245 59.2
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.5e-64 250.4 236 58.9
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.5e-64 250.4 241 56.8
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.0e-64 250.0 244 57.8
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 4.4e-64 248.8 240 59.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 5.7e-64 248.4 246 57.3
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.5e-64 248.1 245 55.9
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-63 246.9 236 58.5
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.7e-63 246.9 236 58.5
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.2e-63 246.5 244 57.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.7e-63 245.7 225 59.1
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.1e-62 244.2 239 57.3
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-62 243.8 236 57.6
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.4e-62 243.0 248 54.4
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.4e-62 243.0 232 57.8
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.4e-62 243.0 241 56.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 5.4e-62 241.9 223 57.8
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 9.2e-62 241.1 223 58.7
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 9.2e-62 241.1 241 54.8
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.0e-61 240.0 245 54.7
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.5e-61 238.8 228 56.1
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 4.5e-61 238.8 250 55.2
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.5e-61 238.8 237 55.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 4.5e-61 238.8 237 57.8
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.9e-61 238.4 238 57.6
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.3e-60 236.5 249 55.4
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.8e-60 235.7 245 53.1
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 5.0e-60 235.3 223 59.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 5.0e-60 235.3 231 56.3
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.0e-60 235.3 164 70.1
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 6.6e-60 235.0 245 57.6
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 6.6e-60 235.0 252 52.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.1e-59 234.2 183 65.6
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.1e-59 234.2 231 56.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.5e-59 233.0 244 52.9
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.6e-59 231.9 252 52.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.1e-58 229.9 158 69.6
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 6.1e-58 228.4 301 48.2
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.1e-58 228.4 236 55.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-57 227.3 252 52.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.4e-57 227.3 252 52.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.8e-57 226.9 227 55.9
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 8.9e-57 224.6 240 54.6
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 8.9e-57 224.6 229 53.7
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.6e-56 223.0 210 55.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-55 220.3 257 51.4
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 3.7e-55 219.2 211 55.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.1e-54 215.7 202 55.9
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.6e-53 213.8 235 54.5
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.0e-53 213.4 222 54.1
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 3.0e-52 209.5 240 51.7
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 3.9e-52 209.1 272 46.3
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 5.0e-52 208.8 231 53.7
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.2e-50 204.1 187 56.7
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.2e-50 201.8 180 56.1
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 6.2e-50 201.8 130 70.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.8e-49 200.3 183 56.3
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 2.0e-48 196.8 157 63.7
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.9e-46 190.3 101 99.0
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 3.0e-44 183.0 231 48.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.2e-42 177.6 164 57.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.1e-41 174.5 153 56.2
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 8.9e-41 171.4 248 44.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.2e-40 171.0 209 46.9
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.5e-40 170.6 153 56.2
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.9e-39 166.4 189 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 4.9e-39 165.6 153 55.6
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 6.4e-39 165.2 129 62.8
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.3e-39 164.9 172 52.9
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 9.2e-38 161.4 177 52.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.6e-37 159.1 197 44.2
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 7.8e-37 158.3 129 61.2
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.8e-33 145.2 154 53.2
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.1e-30 136.0 99 68.7
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.5e-27 126.7 187 43.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.8e-26 123.2 135 51.9
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 5.2e-25 119.0 85 65.9
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.1e-18 97.1 72 66.7
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 4.0e-17 92.8 119 42.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.5e-16 90.9 73 56.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.6e-16 90.1 54 77.8
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.0e-12 78.2 117 41.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 1.8e-09 67.4 138 33.3
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.9e-09 65.5 127 37.8
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.5e-08 64.3 128 30.5


User provided reference genes

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