Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2456 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.4e-60 236.1 120 100.0
FAN12G3268 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.1e-54 216.5 120 90.8
FAN12G0917 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.4e-52 209.5 121 90.1
FAN12G3560 Fragaria x ananassa HOM05D000519 ORTHO05D019175 5.9e-51 204.1 121 86.8
FvH4_4g30060 Fragaria vesca HOM05D000519 ORTHO05D019175 1.9e-49 199.1 108 91.7
FvH4_4g30070 Fragaria vesca HOM05D000519 ORTHO05D019175 6.7e-47 190.7 108 88.9
RcHm_v2.0_Chr5g0010601 Rosa chinensis HOM05D000519 ORTHO05D019175 3.6e-24 115.2 89 71.9
RcHm_v2.0_Chr5g0010541 Rosa chinensis HOM05D000519 ORTHO05D019175 1.2e-22 110.2 96 66.7
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 1.4e-15 86.7 85 56.5
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 4.0e-15 85.1 100 51.0
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 1.1e-12 77.0 85 52.9
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.4e-12 76.6 85 51.8
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.4e-12 76.6 94 50.0
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 4.1e-12 75.1 95 48.4
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 9.1e-12 73.9 114 42.1
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 1.6e-11 73.2 85 49.4
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 2.0e-11 72.8 100 44.0
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 5.9e-11 71.2 92 41.3
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 5.9e-11 71.2 102 42.2
FAN25G1172 Fragaria x ananassa HOM05D000519 ORTHO05D000959 7.7e-11 70.9 94 43.6
FvH4_3g08020 Fragaria vesca HOM05D000519 ORTHO05D000959 1.0e-10 70.5 94 42.6
FAN16G0731 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.0e-10 70.5 94 42.6
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 1.0e-10 70.5 94 46.8
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 1.7e-10 69.7 115 40.9
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.3e-10 69.3 92 41.3
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 2.3e-10 69.3 106 44.3
MD12G1006000 Malus domestica HOM05D000519 ORTHO05D000959 2.9e-10 68.9 78 51.3
RcHm_v2.0_Chr5g0009751 Rosa chinensis HOM05D000519 ORTHO05D000959 3.8e-10 68.6 94 47.9
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 5.0e-10 68.2 91 46.2
RcHm_v2.0_Chr5g0009781 Rosa chinensis HOM05D000519 ORTHO05D000959 5.0e-10 68.2 70 55.7
MD12G1005200 Malus domestica HOM05D000519 ORTHO05D000959 6.6e-10 67.8 84 45.2
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 6.6e-10 67.8 111 42.3
FAN11G3787 Fragaria x ananassa HOM05D000519 ORTHO05D000959 8.6e-10 67.4 71 53.5
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 8.6e-10 67.4 93 41.9
FAN25G0271 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.5e-09 66.6 70 54.3
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 1.9e-09 66.2 84 46.4
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 1.9e-09 66.2 84 46.4
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 1.9e-09 66.2 84 46.4
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 1.9e-09 66.2 92 39.1
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 2.5e-09 65.9 98 40.8
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 3.3e-09 65.5 90 42.2
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 3.3e-09 65.5 95 41.1
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 3.3e-09 65.5 95 41.1
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 3.3e-09 65.5 82 45.1
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 3.3e-09 65.5 82 45.1
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 3.3e-09 65.5 97 45.4
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 3.3e-09 65.5 106 41.5
RcHm_v2.0_Chr3g0476921 Rosa chinensis HOM05D000519 ORTHO05D000959 4.2e-09 65.1 94 45.7
RcHm_v2.0_Chr3g0476961 Rosa chinensis HOM05D000519 ORTHO05D000959 4.2e-09 65.1 94 45.7
MD14G1003700 Malus domestica HOM05D000519 ORTHO05D000959 5.5e-09 64.7 72 47.2
FvH4_6g03900 Fragaria vesca HOM05D000519 ORTHO05D017946 7.2e-09 64.3 90 42.2
FAN09G0620 Fragaria x ananassa HOM05D000519 ORTHO05D017946 7.2e-09 64.3 76 44.7
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 9.5e-09 63.9 58 53.4
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 1.2e-08 63.5 85 41.2
Carub.0007s2500 Capsella rubella HOM05D000519 ORTHO05D000959 1.2e-08 63.5 82 41.5
MD04G1217400 Malus domestica HOM05D000519 ORTHO05D017946 1.2e-08 63.5 73 45.2
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.6e-08 63.2 85 42.4
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 2.1e-08 62.8 95 40.0
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 2.1e-08 62.8 95 40.0
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 2.1e-08 62.8 95 40.0
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 2.1e-08 62.8 88 40.9
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 2.1e-08 62.8 96 38.5
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 2.1e-08 62.8 85 43.5
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 2.1e-08 62.8 85 43.5
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 2.1e-08 62.8 85 43.5
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.1e-08 62.8 93 39.8
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.1e-08 62.8 93 40.9
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.1e-08 62.8 93 39.8
MD12G1232100 Malus domestica HOM05D000519 ORTHO05D017946 2.1e-08 62.8 82 42.7
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 2.1e-08 62.8 82 41.5
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 2.8e-08 62.4 72 48.6
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 2.8e-08 62.4 84 45.2
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 3.6e-08 62.0 95 40.0
DCAR_002223 Daucus carota HOM05D000519 ORTHO05D000959 3.6e-08 62.0 94 37.2
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.6e-08 62.0 104 36.5
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.7e-08 61.6 93 39.8
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 4.7e-08 61.6 95 38.9
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 6.1e-08 61.2 73 41.1
Prupe.4G009200 Prunus persica HOM05D000519 ORTHO05D000959 6.1e-08 61.2 90 41.1
AL7G38460 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 8.0e-08 60.8 82 40.2
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 8.0e-08 60.8 82 41.5
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 8.0e-08 60.8 87 42.5
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.0e-07 60.5 82 42.7
AT4G16500 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 1.0e-07 60.5 82 40.2
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 1.0e-07 60.5 84 42.9
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 1.0e-07 60.5 84 42.9
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 1.0e-07 60.5 85 42.4
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 1.0e-07 60.5 88 39.8
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 1.0e-07 60.5 73 41.1
Prupe.7G005600 Prunus persica HOM05D000519 ORTHO05D000959 1.0e-07 60.5 88 43.2
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-07 60.5 72 44.4
BcaC06g31370 Brassica carinata HOM05D000519 ORTHO05D000959 1.4e-07 60.1 72 47.2
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 1.4e-07 60.1 80 41.2
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 1.4e-07 60.1 91 39.6
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 1.8e-07 59.7 73 41.1
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 1.8e-07 59.7 85 41.2
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.8e-07 59.7 93 37.6
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 1.8e-07 59.7 88 39.8
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 2.3e-07 59.3 94 36.2
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 92 38.0
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 89 39.3
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.3e-07 59.3 89 39.3
RcHm_v2.0_Chr2g0140821 Rosa chinensis HOM05D000519 ORTHO05D000959 2.3e-07 59.3 103 34.0
Thecc.03G313400 Theobroma cacao HOM05D000519 ORTHO05D000959 2.3e-07 59.3 104 37.5
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 3.0e-07 58.9 84 41.7
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.0e-07 58.9 85 37.6
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 3.0e-07 58.9 87 39.1
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 4.0e-07 58.5 85 41.2
MD05G1359200 Malus domestica HOM05D000519 ORTHO05D000959 4.0e-07 58.5 91 44.0
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 4.0e-07 58.5 72 41.7
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 88 38.6
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 5.2e-07 58.2 72 43.1
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 75 42.7
MD12G1005700 Malus domestica HOM05D000519 ORTHO05D000959 5.2e-07 58.2 54 55.6
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 83 41.0
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 5.2e-07 58.2 82 40.2
BcaC04g21429 Brassica carinata HOM05D000519 ORTHO05D000959 6.8e-07 57.8 84 41.7
C09p31910 Brassica napus HOM05D000519 ORTHO05D000959 6.8e-07 57.8 84 41.7
BolC9t56041H Brassica oleracea HOM05D000519 ORTHO05D000959 6.8e-07 57.8 84 41.7
FAN05G3419 Fragaria x ananassa HOM05D010898 ORTHO05D015117 6.8e-07 57.8 88 35.2
Prupe.6G335700 Prunus persica HOM05D017371 ORTHO05D017946 6.8e-07 57.8 85 40.0
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 6.8e-07 57.8 97 40.2
BraA09t38071Z Brassica rapa HOM05D000519 ORTHO05D000959 8.9e-07 57.4 84 41.7
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 8.9e-07 57.4 80 40.0
Duzib205G0308 Durio zibethinus HOM05D000519 ORTHO05D000959 8.9e-07 57.4 72 41.7
Thhalv10026611m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 8.9e-07 57.4 81 38.3
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 8.9e-07 57.4 94 36.2
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 1.2e-06 57.0 84 41.7
CDE07G0061 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 1.2e-06 57.0 108 32.4
MD05G1358700 Malus domestica HOM05D000519 ORTHO05D000959 1.2e-06 57.0 95 37.9
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.2e-06 57.0 85 36.5
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.2e-06 57.0 83 41.0
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 1.2e-06 57.0 81 39.5
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 1.2e-06 57.0 88 40.9
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.5e-06 56.6 73 42.5
A09p24860 Brassica napus HOM05D000519 ORTHO05D000959 1.5e-06 56.6 84 41.7
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 1.5e-06 56.6 73 39.7
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 2.0e-06 56.2 85 42.4
Sed0007435 Sechium edule HOM05D000519 ORTHO05D000959 2.0e-06 56.2 84 40.5
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 2.0e-06 56.2 62 50.0
CDE07G0775 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 2.6e-06 55.8 102 37.3
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 65 44.6
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 3.4e-06 55.5 82 42.7
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 3.4e-06 55.5 82 42.7
Lj1g0005399 Lotus japonicus HOM05D000519 ORTHO05D000959 3.4e-06 55.5 81 40.7
MD05G1359300 Malus domestica HOM05D000519 ORTHO05D000959 3.4e-06 55.5 87 43.7
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 3.4e-06 55.5 83 38.6
PGR042G1719 Punica granatum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 82 41.5
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 3.4e-06 55.5 72 44.4
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 4.4e-06 55.1 72 45.8
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 4.4e-06 55.1 73 43.8
TPR.G945 Trifolium pratense HOM05D000519 ORTHO05D000959 4.4e-06 55.1 80 43.8
Aa31LG2G12600 Aethionema arabicum HOM05D000519 ORTHO05D000959 5.7e-06 54.7 77 42.9
arahy.Tifrunner.gnm1.ann1.4ZS9PZ Arachis hypogaea HOM05D000519 ORTHO05D000959 5.7e-06 54.7 70 42.9
FAN13G3103 Fragaria x ananassa HOM05D000519 ORTHO05D000959 5.7e-06 54.7 97 37.1
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 5.7e-06 54.7 86 37.2
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 5.7e-06 54.7 83 38.6
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 5.7e-06 54.7 72 41.7
Lalb_Chr20g0119301 Lupinus albus HOM05D000519 ORTHO05D000959 7.5e-06 54.3 87 36.8
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 7.5e-06 54.3 85 36.5
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 7.5e-06 54.3 85 42.4
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 7.5e-06 54.3 85 38.8
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 9.8e-06 53.9 83 44.6
Migut.M01408 Erythranthe guttata HOM05D000519 ORTHO05D000959 9.8e-06 53.9 84 38.1
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 9.8e-06 53.9 96 34.4


User provided reference genes

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