Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 7.1e-89 330.5 158 100.0
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 3.5e-88 328.2 156 100.0
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.5e-88 328.2 156 100.0
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.5e-88 328.2 156 100.0
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 2.4e-84 315.5 152 97.4
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.6e-75 285.4 153 86.3
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 3.4e-75 285.0 152 84.2
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 7.7e-75 283.9 152 86.2
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 3.8e-74 281.6 154 84.4
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 6.5e-74 280.8 152 86.2
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 8.5e-74 280.4 150 85.3
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 8.5e-74 280.4 150 84.0
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 1.4e-73 279.6 153 83.7
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.5e-73 278.9 152 85.5
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 3.2e-73 278.5 154 83.1
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 3.2e-73 278.5 153 84.3
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 5.5e-73 277.7 154 82.5
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 9.4e-73 276.9 154 83.1
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.2e-72 276.6 151 80.8
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 1.6e-72 276.2 154 81.8
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 2.1e-72 275.8 151 84.8
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 2.7e-72 275.4 151 82.8
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 6.1e-72 274.2 154 79.9
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 7.9e-72 273.9 154 82.5
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 7.9e-72 273.9 154 79.9
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.4e-71 273.1 154 80.5
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 1.4e-71 273.1 152 82.2
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 1.8e-71 272.7 153 81.7
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 1.8e-71 272.7 153 81.0
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 1.8e-71 272.7 154 80.5
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 1.8e-71 272.7 154 79.9
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 2.3e-71 272.3 154 80.5
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 2.3e-71 272.3 154 81.2
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 2.3e-71 272.3 147 84.4
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.3e-71 272.3 153 82.4
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.3e-71 272.3 153 82.4
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 3.0e-71 271.9 151 83.4
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 3.9e-71 271.6 147 84.4
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 3.9e-71 271.6 154 80.5
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 3.9e-71 271.6 153 83.0
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 5.1e-71 271.2 145 85.5
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 6.7e-71 270.8 154 81.8
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 6.7e-71 270.8 156 79.5
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 8.8e-71 270.4 154 81.8
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 8.8e-71 270.4 154 79.2
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 1.5e-70 269.6 152 80.9
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 1.5e-70 269.6 155 81.9
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 2.0e-70 269.2 152 79.6
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 2.0e-70 269.2 152 79.6
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 2.0e-70 269.2 146 85.6
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 2.5e-70 268.9 154 81.2
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 3.3e-70 268.5 154 79.9
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 3.3e-70 268.5 147 83.0
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 5.7e-70 267.7 151 82.1
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 7.4e-70 267.3 151 80.8
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 9.7e-70 266.9 154 78.6
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 9.7e-70 266.9 154 78.6
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 1.7e-69 266.2 152 78.9
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 1.7e-69 266.2 154 79.2
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 2.2e-69 265.8 152 78.3
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 2.8e-69 265.4 152 78.3
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 2.8e-69 265.4 153 79.1
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 2.8e-69 265.4 145 84.1
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 3.7e-69 265.0 152 77.6
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.7e-69 265.0 151 80.8
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 3.7e-69 265.0 151 80.8
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.7e-69 265.0 154 79.2
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 6.3e-69 264.2 153 78.4
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 6.3e-69 264.2 152 78.3
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 1.1e-68 263.5 152 77.6
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.1e-68 263.5 153 76.5
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 1.4e-68 263.1 152 78.3
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 1.4e-68 263.1 151 80.1
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 2.4e-68 262.3 153 75.8
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 2.4e-68 262.3 154 77.9
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 4.1e-68 261.5 152 77.0
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 9.1e-68 260.4 155 78.1
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 1.5e-67 259.6 152 77.0
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 2.0e-67 259.2 155 76.1
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 2.6e-67 258.8 154 75.3
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 3.4e-67 258.5 160 74.4
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 3.4e-67 258.5 160 74.4
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 3.4e-67 258.5 151 76.2
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 4.5e-67 258.1 153 77.1
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 1.0e-66 256.9 137 83.9
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 3.8e-66 255.0 146 78.1
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 5.0e-66 254.6 151 76.2
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 1.9e-65 252.7 206 60.7
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 2.5e-65 252.3 154 77.3
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 7.2e-65 250.8 151 74.8
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 7.2e-65 250.8 154 76.0
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 1.2e-64 250.0 155 72.9
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 1.4e-63 246.5 146 75.3
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 2.3e-63 245.7 152 78.9
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 2.3e-63 245.7 131 86.3
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 3.0e-63 245.4 137 81.8
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 8.8e-63 243.8 137 79.6
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 1.1e-62 243.4 153 74.5
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.5e-62 243.0 156 80.1
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 7.4e-62 240.7 154 69.5
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 9.7e-62 240.4 154 75.3
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 9.7e-62 240.4 134 81.3
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 9.1e-60 233.8 132 79.5
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 1.1e-57 226.9 125 82.4
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 9.4e-57 223.8 148 73.0
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.4e-55 219.9 118 85.6
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 1.4e-55 219.9 116 84.5
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 5.3e-52 208.0 145 61.4
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 7.0e-52 207.6 113 83.2
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 9.1e-52 207.2 182 58.8
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 2.0e-51 206.1 111 84.7
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 5.9e-51 204.5 142 60.6
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 5.0e-50 201.4 142 59.9
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 1.1e-49 200.3 114 82.5
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 1.1e-49 200.3 113 79.6
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 2.0e-46 189.5 99 82.8
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 1.7e-45 186.4 99 83.8
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 4.1e-44 181.8 95 85.3
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.6e-43 179.9 126 63.5
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 2.6e-38 162.5 171 49.7
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 5.7e-38 161.4 135 62.2
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 9.8e-38 160.6 98 73.5
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 7.0e-36 154.5 150 56.7
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 8.6e-34 147.5 84 83.3
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 1.4e-31 140.2 85 78.8
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 9.2e-28 127.5 73 80.8
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 1.4e-20 103.6 52 84.6
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 7.5e-14 81.3 54 68.5
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 5.8e-06 55.1 65 44.6


User provided reference genes

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