Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.6e-155 552.7 279 100.0
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 1.5e-142 509.6 281 93.6
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.6e-142 508.8 281 93.6
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.9e-141 505.4 281 92.9
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 2.4e-132 475.7 282 89.0
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 8.1e-112 407.5 288 77.8
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 4.3e-105 385.2 293 72.7
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 1.3e-101 373.6 282 72.3
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 3.8e-101 372.1 305 69.8
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 6.4e-101 371.3 285 71.6
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 6.4e-101 371.3 289 70.9
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 2.4e-100 369.4 292 70.9
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 3.5e-99 365.5 284 71.8
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 4.6e-99 365.2 310 68.7
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 6.0e-99 364.8 288 72.9
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 7.9e-99 364.4 282 71.3
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.3e-98 363.6 289 70.2
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 1.3e-98 363.6 293 71.3
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 3.9e-98 362.1 294 68.4
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 3.9e-98 362.1 294 68.4
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 5.1e-98 361.7 283 69.3
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 6.7e-98 361.3 291 69.1
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.5e-97 360.1 286 70.3
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 3.3e-97 359.0 292 68.8
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 4.3e-97 358.6 286 70.3
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 1.3e-96 357.1 289 67.5
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 3.7e-96 355.5 284 69.4
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 3.7e-96 355.5 283 68.2
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 3.7e-96 355.5 281 70.8
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 6.2e-96 354.8 279 68.8
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 8.1e-96 354.4 280 71.1
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 1.4e-95 353.6 295 67.5
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 3.1e-95 352.4 283 70.0
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 4.0e-95 352.1 291 70.1
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 5.3e-95 351.7 285 69.1
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 5.3e-95 351.7 295 66.8
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 2.6e-94 349.4 285 68.8
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 7.6e-94 347.8 284 68.0
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 2.2e-93 346.3 284 68.7
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 2.9e-93 345.9 283 67.8
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 2.9e-93 345.9 284 69.0
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 4.9e-93 345.1 284 68.3
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 2.5e-92 342.8 279 65.9
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 2.5e-92 342.8 283 66.8
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 4.2e-92 342.0 292 65.8
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 5.5e-92 341.7 289 67.1
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 2.1e-91 339.7 319 62.7
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.0e-90 337.4 279 68.1
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 1.8e-90 336.7 278 66.5
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 3.0e-90 335.9 288 66.3
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 1.1e-89 334.0 279 67.0
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.5e-89 333.6 286 66.1
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 3.3e-89 332.4 414 51.7
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 4.3e-89 332.0 279 65.2
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 4.3e-89 332.0 284 66.2
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 2.8e-88 329.3 293 66.2
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 2.8e-88 329.3 367 54.2
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 4.8e-88 328.6 283 65.7
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 8.2e-88 327.8 280 63.9
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 6.9e-87 324.7 286 65.4
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 4.5e-86 322.0 279 65.2
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 1.9e-84 316.6 292 64.0
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.2e-84 315.8 201 81.1
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 1.2e-83 313.9 282 62.8
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 2.7e-83 312.8 300 58.3
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 2.7e-83 312.8 283 62.5
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 4.6e-83 312.0 282 64.2
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 6.1e-83 311.6 278 63.3
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 7.9e-83 311.2 283 61.8
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.0e-82 310.8 201 78.1
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 1.3e-82 310.5 349 54.7
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 1.3e-82 310.5 280 63.6
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 5.1e-82 308.5 283 62.5
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 1.1e-81 307.4 281 61.9
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.5e-81 307.0 282 63.1
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 2.5e-81 306.2 226 70.8
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 4.3e-81 305.4 286 61.9
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 7.4e-81 304.7 321 57.3
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.8e-79 300.1 302 57.0
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 2.4e-79 299.7 287 61.3
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 4.5e-78 295.4 280 61.4
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 6.5e-77 291.6 284 59.5
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 7.2e-76 288.1 278 59.4
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 9.4e-76 287.7 278 59.7
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 4.6e-75 285.4 298 57.0
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 7.9e-75 284.6 227 65.6
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 3.0e-74 282.7 201 72.1
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.5e-73 280.4 307 55.0
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 1.7e-72 276.9 281 59.4
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 2.2e-72 276.6 190 71.1
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 1.4e-71 273.9 242 62.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.0e-69 267.7 281 54.8
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 1.6e-67 260.4 246 63.4
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 2.7e-67 259.6 241 62.2
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 1.4e-66 257.3 149 85.2
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 2.6e-62 243.0 314 50.0
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 4.2e-60 235.7 220 56.4
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 6.3e-56 221.9 187 65.8
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 4.5e-54 215.7 158 73.4
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 4.7e-51 205.7 209 59.3
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.2e-48 196.8 127 78.0
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 4.1e-47 192.6 132 77.3
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 6.5e-45 185.3 240 44.6
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 1.5e-44 184.1 206 52.4
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 1.0e-42 177.9 397 37.3
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.7e-40 169.5 112 77.7
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 2.3e-37 160.2 199 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 1.2e-30 137.9 153 52.9
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 2.5e-28 130.2 223 42.2
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 8.9e-26 121.7 77 74.0
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 9.2e-23 111.7 75 73.3
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.6e-22 109.4 96 62.5
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 3.6e-19 99.8 283 33.9
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.9e-12 77.4 75 54.7
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 1.4e-10 71.2 258 27.1
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 3.8e-08 63.2 58 53.4
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 7.1e-07 58.9 61 54.1
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 6.0e-06 55.8 38 68.4


User provided reference genes

Program Settings