Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2660.2 1417 100.0
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2509.6 1417 94.7
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2504.9 1417 94.3
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 2429.4 1417 90.2
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2243.0 1231 96.2
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 2239.2 1231 96.0
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 2000.3 1416 75.1
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1699.9 1428 65.7
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1657.1 1417 64.6
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1598.9 1423 61.1
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1586.6 1428 61.9
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1566.6 1435 61.3
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1552.7 1418 60.6
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1548.1 1425 60.5
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1545.4 1102 74.9
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1525.8 1430 59.0
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1518.1 1254 65.3
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1510.7 1427 59.3
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1505.0 1252 64.3
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1488.8 1429 59.0
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1486.9 1426 58.6
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1483.8 1417 58.4
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1472.2 1283 61.3
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1471.4 1328 60.2
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1448.3 1432 57.3
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1446.0 1426 57.6
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1406.3 1431 55.5
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1406.0 1425 55.1
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1392.9 1437 54.6
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1342.4 1452 52.8
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1330.5 1428 52.5
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1325.5 1444 51.6
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1324.7 1438 53.3
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1321.6 1402 52.4
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1312.7 1327 54.6
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1311.6 1434 52.1
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1310.8 1449 51.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1310.8 1430 52.6
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1307.0 1247 59.3
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1302.7 1434 52.2
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1297.0 1434 51.5
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1295.4 1330 53.6
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1294.6 1325 53.9
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1292.3 1319 53.5
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1282.7 1329 53.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1276.9 1319 53.2
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1276.5 1320 53.2
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1276.2 1337 52.6
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1261.1 1379 52.4
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1253.0 1345 52.6
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1244.6 1379 51.9
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1228.4 1446 48.7
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1211.1 1417 51.2
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1175.6 1320 50.2
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1166.4 1116 58.2
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1129.0 1044 59.7
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1125.5 1217 51.8
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1122.8 1234 51.9
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1110.1 1038 59.7
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1099.0 1156 53.2
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 0.0e+00 1093.2 1122 54.1
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 7.6e-307 1057.7 1459 44.8
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.9e-306 1055.0 1043 56.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 6.0e-304 1048.1 1047 56.0
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.4e-292 1009.6 847 63.8
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.8e-284 983.4 1443 43.3
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 3.3e-278 962.6 847 61.6
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.0e-263 914.4 1365 41.8
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 4.7e-232 809.3 1292 40.0
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.8e-228 797.3 991 48.7
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 1.8e-228 797.3 1447 37.2
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 3.3e-217 760.0 695 59.3
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.9e-202 709.9 715 56.2
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 1.8e-191 674.5 623 58.4
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 2.5e-185 654.1 1519 33.5
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 5.6e-185 652.9 905 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.3e-184 651.7 1409 34.1
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 9.0e-183 645.6 1355 34.6
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 2.4e-180 637.5 1319 34.7
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 7.3e-116 423.3 578 45.3
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 4.6e-102 377.5 472 47.2
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 3.0e-101 374.8 1254 27.6
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.3e-88 332.8 312 55.8
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 6.6e-85 320.5 337 54.9
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 3.5e-78 298.1 283 60.4
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 6.6e-77 293.9 274 58.4
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 3.8e-64 251.5 292 51.7
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 5.5e-47 194.5 268 51.5
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 7.7e-41 174.1 216 50.5
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.8e-37 162.9 120 71.7
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.4e-31 143.3 104 73.1
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 9.7e-28 130.6 287 34.1
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.4e-26 125.9 129 51.9
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.2e-20 107.1 184 44.6
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 3.2e-15 89.0 118 44.9
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 2.4e-10 72.8 87 46.0
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 2.3e-08 66.2 277 24.9
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 8.6e-08 64.3 118 39.8


User provided reference genes

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