Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.5e-60 235.3 126 100.0
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.8e-26 122.9 72 93.1
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.8e-26 122.9 72 93.1
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 7.1e-23 110.9 70 78.6
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.1e-22 109.4 70 81.4
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 9.0e-18 94.0 99 57.6
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 9.0e-18 94.0 99 57.6
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 6.4e-16 87.8 63 68.3
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 1.9e-15 86.3 60 71.7
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 7.1e-15 84.3 71 63.4
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 9.3e-15 84.0 71 57.7
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.2e-14 83.6 60 70.0
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 3.5e-14 82.0 68 63.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.6e-14 81.6 70 61.4
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 4.6e-14 81.6 71 60.6
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 6.0e-14 81.3 64 65.6
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 7.9e-14 80.9 71 56.3
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.3e-13 80.1 71 54.9
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.0e-13 79.0 73 54.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 5.1e-13 78.2 60 61.7
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 5.1e-13 78.2 72 59.7
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 8.7e-13 77.4 62 64.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-12 77.0 57 66.7
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-12 77.0 57 68.4
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.9e-12 76.3 60 60.0
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 1.9e-12 76.3 66 63.6
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 2.5e-12 75.9 67 58.2
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 2.5e-12 75.9 67 58.2
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 4.3e-12 75.1 55 69.1
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 5.6e-12 74.7 67 56.7
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 5.6e-12 74.7 57 66.7
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 5.6e-12 74.7 57 64.9
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 5.6e-12 74.7 62 59.7
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 5.6e-12 74.7 71 54.9
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 7.4e-12 74.3 67 58.2
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 7.4e-12 74.3 69 53.6
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 9.6e-12 73.9 64 60.9
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 9.6e-12 73.9 57 63.2
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.3e-11 73.6 72 56.9
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.3e-11 73.6 61 60.7
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.6e-11 73.2 56 64.3
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.6e-11 73.2 57 61.4
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.1e-11 72.8 67 56.7
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 3.6e-11 72.0 57 64.9
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 3.6e-11 72.0 57 63.2
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.6e-11 72.0 62 62.9
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 3.6e-11 72.0 64 57.8
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 4.8e-11 71.6 67 55.2
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 4.8e-11 71.6 70 54.3
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 4.8e-11 71.6 59 61.0
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 4.8e-11 71.6 71 56.3
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 4.8e-11 71.6 64 57.8
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.2e-11 71.2 66 59.1
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.2e-11 71.2 66 59.1
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.1e-11 70.9 66 57.6
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 8.1e-11 70.9 65 53.8
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-10 70.5 57 57.9
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.1e-10 70.5 61 60.7
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.1e-10 70.5 69 53.6
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.4e-10 70.1 70 55.7
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.4e-10 69.3 59 62.7
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 4.0e-10 68.6 81 48.1
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 4.0e-10 68.6 68 54.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 5.3e-10 68.2 62 58.1
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 5.3e-10 68.2 72 48.6
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 6.9e-10 67.8 63 55.6
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 2.6e-09 65.9 65 53.8
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.4e-09 65.5 55 63.6
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 5.8e-09 64.7 69 52.2
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 5.8e-09 64.7 56 58.9
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 7.6e-09 64.3 57 57.9
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 1.7e-08 63.2 45 66.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 3.8e-08 62.0 66 45.5
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 4.2e-07 58.5 57 49.1
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.5e-07 58.2 59 47.5
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 7.1e-07 57.8 59 50.8
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 7.1e-07 57.8 57 49.1
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 9.3e-07 57.4 59 47.5
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-06 57.0 69 43.5
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-06 57.0 59 47.5
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 3.5e-06 55.5 60 48.3


User provided reference genes

Program Settings