Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 0.0e+00 1125.5 626 100.0
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 0.0e+00 1096.3 626 93.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 0.0e+00 1077.8 636 94.5
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.6e-309 1065.4 626 90.6
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.7e-309 1064.7 626 87.5
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.8e-268 929.1 626 77.8
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.8e-231 806.2 630 67.0
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.9e-231 805.1 630 70.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.1e-228 795.4 630 66.3
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 7.6e-227 790.8 627 64.8
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.0e-218 761.5 621 63.6
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.2e-217 758.4 624 63.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-216 756.5 638 63.6
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.6e-216 755.0 628 66.9
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.6e-216 755.0 624 66.5
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.1e-216 754.6 631 63.4
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.0e-215 753.8 628 66.7
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-215 753.4 638 63.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.3e-215 752.7 626 66.5
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 2.5e-214 749.2 634 66.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-214 749.2 628 64.3
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.7e-213 746.5 630 66.5
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 3.7e-213 745.3 627 62.0
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 6.9e-212 741.1 634 62.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.5e-211 738.4 643 62.1
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 2.9e-210 735.7 627 62.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 6.5e-210 734.6 626 61.5
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.9e-209 733.0 625 65.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.2e-209 731.9 631 62.8
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.2e-208 730.3 629 65.5
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 4.7e-208 728.4 626 60.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.8e-207 724.2 632 60.8
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 8.8e-207 724.2 630 59.7
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.5e-206 723.4 632 60.3
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.0e-206 723.0 632 60.8
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.3e-205 720.3 640 60.5
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.3e-205 720.3 630 60.3
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.7e-205 719.9 630 64.0
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.8e-205 719.2 632 59.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.3e-204 714.9 624 60.4
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 7.0e-204 714.5 638 60.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.5e-203 712.2 633 60.7
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.9e-202 709.1 633 60.2
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.0e-202 708.4 630 63.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.1e-201 707.2 631 62.4
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 5.5e-201 704.9 630 63.5
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 8.0e-200 701.0 631 62.4
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 5.2e-199 698.4 637 59.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 8.8e-199 697.6 635 62.5
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.5e-198 696.8 628 61.3
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.4e-198 695.3 631 58.2
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.2e-197 693.0 631 58.2
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.2e-197 693.0 624 58.7
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.1e-196 689.1 630 58.6
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 5.3e-196 688.3 635 58.4
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 9.1e-196 687.6 582 63.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 2.7e-195 686.0 582 64.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.0e-194 681.8 630 59.4
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.0e-194 681.8 632 56.6
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 6.5e-194 681.4 618 61.7
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 8.5e-194 681.0 627 60.0
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.9e-193 679.9 631 57.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 1.9e-193 679.9 630 60.5
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.2e-193 679.1 626 60.1
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 4.2e-193 678.7 627 59.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.1e-192 676.4 632 57.3
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.1e-192 676.4 626 57.0
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.1e-192 676.4 648 60.0
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.7e-192 676.0 629 59.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 6.1e-192 674.9 636 56.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 6.1e-192 674.9 632 63.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 4.0e-191 672.2 629 55.8
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 8.8e-191 671.0 629 55.8
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.4e-190 669.1 625 56.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 5.7e-190 668.3 625 56.8
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.7e-189 666.8 633 55.9
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 6.3e-189 664.8 623 57.1
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 8.3e-189 664.5 629 57.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.1e-188 662.1 625 56.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.6e-187 660.2 639 58.2
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.7e-187 659.4 644 53.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.0e-186 657.5 630 59.8
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.6e-184 650.2 626 55.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.0e-183 646.0 636 58.6
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.8e-183 644.4 680 52.1
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.5e-182 641.3 638 58.2
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 9.8e-182 641.0 736 51.2
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.6e-179 633.6 635 54.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.0e-179 633.3 628 58.9
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 4.5e-179 632.1 656 55.8
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.5e-179 632.1 628 58.9
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.8e-176 622.9 677 51.7
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.0e-175 619.0 694 52.2
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.0e-175 619.0 632 56.6
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.0e-170 604.4 625 59.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.1e-168 596.7 615 55.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.6e-168 595.9 744 47.7
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 8.3e-165 584.7 526 58.4
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 4.7e-160 568.9 656 48.9
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 4.0e-159 565.8 593 54.1
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 6.4e-157 558.5 631 53.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 6.4e-157 558.5 600 53.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 7.1e-156 555.1 635 49.0
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.7e-155 553.1 601 52.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.6e-144 516.2 653 48.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.7e-141 507.3 519 54.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.6e-118 430.3 447 52.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.1e-111 408.3 449 57.0
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 3.1e-111 406.8 327 62.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 3.0e-106 390.2 342 58.2
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 6.7e-106 389.0 448 53.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.3e-103 379.4 384 52.1
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-102 378.3 422 50.9
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-98 363.6 420 50.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-94 350.1 408 49.3
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.5e-93 345.9 420 48.8
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.2e-92 343.2 422 48.3
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-90 337.0 395 50.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-87 327.4 422 47.2
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.5e-78 297.0 390 46.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 3.6e-75 287.0 209 68.4
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-74 284.3 424 42.0
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 3.4e-73 280.4 529 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.5e-70 270.0 546 31.1
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.9e-61 240.7 537 32.2
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 9.5e-60 235.7 518 30.3
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 8.0e-59 232.6 259 49.8
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.3e-56 225.3 554 27.8
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 3.3e-52 210.7 167 62.3
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 2.8e-51 207.6 212 53.8
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.9e-48 196.8 162 63.0
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.9e-45 187.2 530 26.4
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.1e-43 181.4 236 44.9
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.2e-41 175.6 236 44.5
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.7e-35 153.7 113 69.9
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 5.4e-31 140.2 108 64.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.6e-28 130.2 104 60.6
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.6e-27 127.5 97 60.8
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.9e-24 117.9 191 39.3
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 5.4e-23 113.6 89 59.6
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.1e-23 113.2 97 54.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-20 104.8 98 51.0
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 9.6e-20 102.8 104 51.9
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.0e-13 82.8 80 53.8
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.8e-13 82.0 170 35.3
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.5e-12 78.2 44 77.3
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.5e-12 78.2 44 77.3
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.6e-12 77.0 48 75.0
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 9.6e-12 76.3 94 40.4
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.6e-11 75.5 84 41.7
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 2.6e-09 68.2 59 52.5
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 2.6e-09 68.2 59 52.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.4e-07 61.6 96 40.6
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.2e-06 59.3 59 47.5


User provided reference genes

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