Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 3.0e-161 572.0 336 100.0
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 6.7e-153 544.3 335 96.7
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 3.2e-131 472.2 306 95.1
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.2e-130 470.3 306 94.4
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 2.8e-103 379.4 308 74.7
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 7.8e-61 238.4 293 47.8
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 4.9e-55 219.2 306 44.1
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 2.9e-31 140.2 298 34.2
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 7.2e-30 135.6 298 34.6
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 3.3e-27 126.7 294 33.3
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 8.2e-26 122.1 296 31.8
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 4.4e-19 99.8 305 28.5
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 7.7e-16 89.0 298 26.5
FAN17G2266 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.1e-14 85.1 45 88.9
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 8.0e-13 79.0 224 27.2
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 1.4e-12 78.2 221 27.6
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 2.3e-12 77.4 64 56.2
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 2.3e-12 77.4 302 27.2
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 3.0e-12 77.0 221 27.1
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 5.2e-12 76.3 310 23.2
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.5e-11 74.7 314 22.9
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 2.6e-11 73.9 226 25.7
arahy.Tifrunner.gnm1.ann1.P32IB9 Arachis hypogaea HOM05D011141 ORTHO05D010879 5.7e-11 72.8 237 27.8
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 5.7e-11 72.8 244 27.5
arahy.Tifrunner.gnm1.ann1.R8V4SK Arachis hypogaea HOM05D011141 ORTHO05D010879 7.4e-11 72.4 236 26.7
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 7.4e-11 72.4 338 25.4
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 2.2e-10 70.9 57 52.6
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.2e-10 70.9 59 52.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 3.7e-10 70.1 222 27.0
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 4.8e-10 69.7 54 55.6
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 4.8e-10 69.7 54 55.6
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 6.3e-10 69.3 222 24.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.8e-09 67.8 58 51.7
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 2.4e-09 67.4 113 36.3
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.1e-09 67.0 114 32.5
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 3.1e-09 67.0 114 38.6
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 4.1e-09 66.6 296 23.6
Glyma.10G293000 Glycine max HOM05D011141 ORTHO05D010879 5.3e-09 66.2 226 25.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.0e-09 65.9 46 54.3
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.0e-09 65.9 49 55.1
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 9.1e-09 65.5 221 26.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.2e-08 65.1 66 47.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.2e-08 65.1 113 33.6
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.6e-08 64.7 43 58.1
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.6e-08 64.7 66 43.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.6e-08 64.7 42 54.8
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.6e-08 64.7 67 44.8
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.0e-08 64.3 42 57.1
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.6e-08 63.9 42 59.5
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 4.5e-08 63.2 51 51.0
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 4.5e-08 63.2 255 23.1
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 4.5e-08 63.2 226 27.4
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 5.9e-08 62.8 59 50.8
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.7e-08 62.4 66 48.5
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.0e-07 62.0 55 49.1
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.0e-07 62.0 99 36.4
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.0e-07 62.0 54 46.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.0e-07 62.0 89 36.0
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.0e-07 62.0 57 47.4
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.3e-07 61.6 59 44.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.3e-07 61.6 42 52.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.7e-07 61.2 79 39.2
Sed0016606 Sechium edule HOM05D010496 ORTHO05D010879 1.7e-07 61.2 279 24.4
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.7e-07 61.2 79 38.0
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.2e-07 60.8 44 50.0
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-07 60.8 60 45.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 2.2e-07 60.8 111 33.3
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.2e-07 60.8 50 52.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.2e-07 60.8 66 42.4
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 2.9e-07 60.5 83 37.3
Phvul.005G092100 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 2.9e-07 60.5 50 52.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.8e-07 60.1 43 53.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 3.8e-07 60.1 42 57.1
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.8e-07 60.1 42 57.1
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.8e-07 60.1 42 57.1
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 3.8e-07 60.1 43 55.8
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 5.0e-07 59.7 58 44.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-07 59.7 52 51.9
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.0e-07 59.7 46 50.0
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.0e-07 59.7 53 49.1
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 6.5e-07 59.3 107 29.9
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 6.5e-07 59.3 146 30.8
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 6.5e-07 59.3 46 45.7
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 8.5e-07 58.9 60 41.7
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 8.5e-07 58.9 73 39.7
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 8.5e-07 58.9 248 25.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.1e-06 58.5 43 53.5
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.1e-06 58.5 43 53.5
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-06 58.5 43 53.5
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-06 58.5 43 53.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.1e-06 58.5 88 36.4
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.5e-06 58.2 57 49.1
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.5e-06 58.2 109 31.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.9e-06 57.8 43 51.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.9e-06 57.8 60 45.0
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.5e-06 57.4 60 43.3
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.5e-06 57.4 67 40.3
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.5e-06 57.4 43 51.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.2e-06 57.0 66 40.9
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.2e-06 57.0 65 44.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.2e-06 57.0 65 44.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.2e-06 57.0 65 44.6
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.2e-06 57.0 120 32.5
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 3.2e-06 57.0 96 34.4
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 3.2e-06 57.0 43 48.8
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 3.2e-06 57.0 52 50.0
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 3.2e-06 57.0 42 52.4
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.2e-06 57.0 59 45.8
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 4.2e-06 56.6 65 44.6
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 4.2e-06 56.6 47 46.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 4.2e-06 56.6 42 45.2
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.5e-06 56.2 62 38.7
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.5e-06 56.2 62 38.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 5.5e-06 56.2 42 50.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 5.5e-06 56.2 69 36.2
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 5.5e-06 56.2 47 48.9
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 5.5e-06 56.2 135 28.1
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.5e-06 56.2 43 53.5
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.5e-06 56.2 60 43.3
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.5e-06 56.2 60 43.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 7.2e-06 55.8 42 52.4
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.2e-06 55.8 42 52.4
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.2e-06 55.8 42 52.4
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 7.2e-06 55.8 64 39.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 9.4e-06 55.5 61 37.7
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 9.4e-06 55.5 64 37.5


User provided reference genes

Program Settings