Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.8e-172 606.7 299 100.0
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.9e-163 577.8 291 98.3
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.4e-138 494.6 249 97.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.2e-126 454.5 225 98.2
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.2e-126 454.5 225 98.2
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.4e-125 452.6 225 97.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 9.0e-125 450.7 225 95.6
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 5.4e-114 414.8 225 87.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.1e-113 412.9 225 86.7
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.1e-109 400.6 225 85.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 7.6e-108 394.4 225 86.2
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 6.4e-107 391.3 225 82.7
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 8.4e-107 391.0 225 84.9
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.2e-106 388.7 225 81.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.2e-106 388.7 225 81.3
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 5.5e-106 388.3 225 81.8
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 7.1e-106 387.9 225 81.8
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.2e-105 387.1 225 82.2
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.6e-105 386.7 225 82.7
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.1e-105 386.3 225 82.7
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.7e-105 386.0 225 80.9
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.5e-105 385.6 225 81.8
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.0e-104 384.0 223 82.5
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.0e-104 384.0 225 81.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.8e-104 383.3 225 82.2
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 3.0e-104 382.5 224 81.2
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 6.7e-104 381.3 225 81.8
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 8.7e-104 380.9 225 81.8
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 8.7e-104 380.9 225 79.1
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 8.7e-104 380.9 225 77.8
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.5e-103 380.2 225 77.3
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.3e-103 379.0 223 78.9
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.3e-103 379.0 225 82.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 5.6e-103 378.3 225 77.8
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 5.6e-103 378.3 225 77.3
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.3e-102 377.1 225 81.8
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.1e-102 376.3 225 80.9
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 6.2e-102 374.8 279 68.8
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-102 374.4 226 80.1
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-102 374.4 226 80.1
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 8.2e-102 374.4 226 80.1
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.1e-101 374.0 225 80.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.4e-101 373.6 225 79.6
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.4e-101 373.6 225 80.9
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.4e-101 373.6 225 77.3
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.4e-101 372.9 225 77.8
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.1e-101 372.5 225 80.4
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 5.3e-101 371.7 225 78.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 9.0e-101 370.9 224 79.9
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 4.5e-100 368.6 225 77.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.7e-99 366.7 225 79.1
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 8.4e-99 364.4 225 76.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 8.4e-99 364.4 225 78.7
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.9e-98 363.2 225 77.3
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.9e-98 363.2 225 76.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 5.5e-98 361.7 225 76.0
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 7.1e-98 361.3 226 75.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 9.3e-98 360.9 225 76.4
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.7e-97 359.4 225 74.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 4.6e-97 358.6 225 75.6
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 7.9e-97 357.8 226 75.2
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 7.9e-97 357.8 227 74.9
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.3e-96 357.1 225 74.7
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.8e-96 356.7 225 75.6
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 6.7e-96 354.8 225 76.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.5e-95 353.6 225 76.0
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.9e-95 353.2 225 75.1
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.5e-95 352.8 197 85.3
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 2.5e-95 352.8 272 65.1
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.3e-95 352.4 225 76.0
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 4.3e-95 352.1 225 75.1
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 5.7e-95 351.7 225 75.6
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 5.7e-95 351.7 225 74.2
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 5.7e-95 351.7 225 74.2
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 9.7e-95 350.9 197 84.3
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.2e-94 349.7 225 72.0
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 2.8e-94 349.4 227 73.6
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 6.3e-94 348.2 227 74.9
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.2e-94 347.8 225 74.2
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 8.2e-94 347.8 225 74.2
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.8e-93 346.7 225 73.8
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.4e-93 346.3 225 73.8
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.4e-93 346.3 225 73.8
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 4.1e-93 345.5 266 65.8
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 4.1e-93 345.5 225 73.3
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 6.9e-93 344.7 228 72.8
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.2e-92 344.0 232 71.6
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.2e-91 339.7 225 72.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 2.9e-91 339.3 225 72.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 1.9e-90 336.7 226 72.6
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 2.5e-90 336.3 225 75.1
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 2.5e-90 336.3 208 76.9
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 3.2e-90 335.9 228 71.1
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 9.4e-90 334.3 225 68.9
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.9e-87 326.6 225 70.7
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.9e-87 326.6 225 72.0
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 4.3e-87 325.5 225 69.8
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 7.4e-87 324.7 227 68.7
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 7.4e-87 324.7 227 68.3
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.3e-86 323.9 225 69.8
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 6.3e-86 321.6 225 72.4
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.4e-85 320.5 225 69.3
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 4.5e-84 315.5 225 66.7
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.9e-82 310.1 217 68.7
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 2.7e-81 306.2 177 83.6
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.8e-80 303.5 225 68.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.2e-76 290.8 228 64.0
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.6e-76 289.7 228 62.3
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 6.5e-75 285.0 222 61.3
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.5e-74 283.1 225 64.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.2e-74 281.6 225 66.2
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 4.7e-73 278.9 174 76.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 3.3e-71 272.7 245 58.0
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 4.4e-71 272.3 226 59.7
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 7.4e-71 271.6 260 55.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 7.4e-71 271.6 260 55.8
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 2.2e-70 270.0 207 62.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-67 260.8 122 100.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 3.8e-67 259.2 229 61.1
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.4e-64 250.8 225 54.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.2e-63 247.7 250 55.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.2e-56 222.2 225 49.8
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-55 221.1 164 66.5
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 4.4e-55 219.2 225 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.1e-50 204.5 225 45.8
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 9.2e-45 184.9 228 43.9
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 3.5e-44 183.0 205 44.9
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.7e-43 180.6 231 42.4
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.5e-39 167.5 130 63.1
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-38 164.1 105 76.2
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.9e-38 162.5 105 75.2
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.6e-36 157.5 207 45.4
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.7e-33 146.0 150 52.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.5e-26 124.4 72 77.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.3e-22 108.6 105 56.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.4e-21 107.1 77 58.4
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.6e-20 104.4 122 47.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 6.6e-19 99.0 79 63.3
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.3e-18 96.3 51 84.3
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.3e-18 96.3 51 84.3
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.5e-18 95.1 51 84.3
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 6.2e-17 92.4 51 82.4
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.2e-15 88.2 74 52.7
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.5e-15 87.8 76 61.8
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.8e-14 83.2 60 66.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.6e-12 76.3 51 70.6
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.0e-12 75.9 51 76.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.3e-11 73.9 223 30.0
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.3e-09 68.2 59 55.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.8e-08 64.3 78 52.6


User provided reference genes

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