Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-224 782.3 394 100.0
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.2e-215 750.4 391 95.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.6e-214 749.2 391 95.1
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.7e-214 748.4 391 95.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.0e-213 745.0 391 94.9
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.8e-210 735.7 391 93.4
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 8.6e-192 673.7 390 83.8
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 3.6e-190 668.3 385 83.9
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.3e-189 665.6 385 83.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 4.1e-186 654.8 385 82.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.3e-184 649.0 385 80.3
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.0e-184 648.7 385 82.1
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.1e-183 646.7 384 79.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.9e-183 646.0 389 79.9
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.9e-183 646.0 385 80.3
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.8e-182 642.1 382 79.6
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 2.8e-182 642.1 389 79.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.8e-182 642.1 384 79.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.5e-180 636.3 385 79.2
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.4e-180 635.2 385 78.7
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 2.2e-179 632.5 385 78.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 2.9e-179 632.1 385 79.0
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 4.9e-179 631.3 385 78.2
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 6.4e-179 630.9 385 77.9
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 4.1e-178 628.2 384 76.8
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.1e-178 628.2 385 76.9
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 4.1e-178 628.2 385 77.1
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 7.8e-177 624.0 388 77.1
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.0e-176 623.6 388 76.0
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.7e-176 622.9 383 78.6
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 2.3e-176 622.5 385 77.1
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 6.6e-176 620.9 388 76.5
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.6e-176 620.5 384 77.3
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.1e-175 620.2 386 76.9
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.8e-174 615.5 385 77.1
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.8e-174 615.5 390 76.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.7e-174 614.8 384 76.3
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 4.7e-174 614.8 388 77.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 6.2e-174 614.4 384 76.6
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.1e-173 613.6 391 76.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.3e-173 612.5 388 75.3
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.1e-173 612.1 384 76.0
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.0e-173 611.7 385 76.1
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.6e-172 609.0 385 75.1
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 9.8e-172 607.1 385 76.4
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.7e-171 606.3 383 76.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.7e-171 606.3 385 73.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.2e-171 605.9 388 74.5
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.9e-171 605.5 385 75.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 4.9e-171 604.7 385 75.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 6.4e-171 604.4 385 75.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.1e-170 603.6 385 74.8
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.4e-170 603.2 385 74.8
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.4e-170 603.2 385 76.6
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.4e-170 603.2 383 74.2
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.4e-170 603.2 385 73.5
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.4e-170 603.2 385 74.8
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 2.4e-170 602.4 382 74.1
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 4.1e-170 601.7 385 75.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 7.1e-170 600.9 385 74.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.6e-169 599.7 385 73.2
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.1e-169 599.4 387 72.9
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 3.5e-169 598.6 385 73.5
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 7.8e-169 597.4 385 74.5
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.7e-168 596.3 385 73.8
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 5.1e-168 594.7 322 92.9
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 8.6e-168 594.0 383 73.4
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 8.6e-168 594.0 383 73.4
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.5e-167 593.2 387 73.4
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 4.3e-167 591.7 388 72.2
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.4e-165 586.6 382 72.5
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.4e-165 586.6 385 71.4
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.8e-165 586.3 387 71.3
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.8e-165 586.3 390 74.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.3e-165 585.9 385 71.7
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.3e-165 585.9 385 75.3
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.8e-165 584.3 385 71.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.6e-164 582.4 385 71.7
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.4e-164 581.6 385 70.6
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 7.6e-164 580.9 389 72.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 9.9e-164 580.5 387 69.5
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.9e-164 580.5 385 70.6
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-163 580.1 387 69.3
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.7e-163 579.7 385 70.6
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.7e-163 579.7 357 77.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.2e-163 579.3 385 71.2
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 8.4e-163 577.4 387 69.5
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 8.4e-163 577.4 387 69.5
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 8.4e-163 577.4 387 69.5
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 4.1e-162 575.1 385 72.2
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.6e-161 573.2 385 72.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.7e-160 569.7 386 71.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.9e-159 566.2 383 68.1
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.1e-157 560.5 385 71.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.4e-157 560.1 385 69.1
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.4e-157 559.3 363 73.0
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 8.4e-155 550.8 386 66.8
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.9e-154 549.7 385 70.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.2e-154 548.5 391 67.3
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.6e-153 546.6 387 68.7
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.7e-153 545.8 390 69.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.5e-151 540.0 387 68.0
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.1e-150 536.2 389 65.3
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 1.4e-149 533.5 382 64.7
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.8e-149 533.1 386 67.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.6e-148 529.3 333 77.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.7e-147 526.6 347 74.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.8e-144 516.5 388 61.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.7e-144 514.6 325 75.7
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.9e-143 513.1 387 64.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.3e-142 510.4 339 72.6
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.3e-139 500.4 383 65.3
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 7.1e-138 494.6 384 63.8
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.6e-134 483.4 297 76.8
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.1e-134 483.0 320 75.9
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.3e-128 463.0 295 76.6
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.5e-127 460.3 295 75.9
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 6.5e-123 444.9 392 54.6
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.3e-117 425.2 385 54.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-116 423.7 389 54.0
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 2.2e-115 419.9 371 55.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 2.7e-113 412.9 380 57.1
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.2e-100 370.9 384 47.9
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.7e-92 343.2 394 45.7
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 8.9e-80 301.6 189 73.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 5.9e-76 288.9 196 69.4
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.7e-75 287.3 453 40.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.2e-70 270.4 521 34.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.1e-65 253.8 405 37.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.8e-65 253.4 378 42.1
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 1.5e-50 204.5 123 76.4
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.2e-45 186.4 309 40.5
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.6e-39 167.2 108 77.8
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.9e-38 163.7 157 54.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.4e-37 161.4 93 78.5
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.4e-32 144.8 237 39.2
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 6.9e-32 142.5 117 57.3
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 5.8e-31 139.4 87 72.4
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 3.5e-20 103.6 68 77.9
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.0e-19 100.5 68 64.7
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.5e-18 98.2 54 83.3
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.1e-12 77.8 67 56.7


User provided reference genes

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