Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1966 Fragaria x ananassa HOM05D001944 ORTHO05D020674 0.0e+00 1323.5 684 100.0
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 0.0e+00 1106.3 761 79.6
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 0.0e+00 1078.2 761 77.8
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 1.6e-222 776.5 786 60.8
FAN17G2018 Fragaria x ananassa HOM05D001944 ORTHO05D020674 2.3e-144 516.9 458 66.2
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 1.3e-75 288.5 848 32.9
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 3.4e-71 273.9 829 33.5
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 5.5e-69 266.5 929 31.0
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 9.3e-69 265.8 875 31.7
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.6e-63 247.7 677 34.1
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 2.9e-62 244.2 678 33.2
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 6.5e-62 243.0 678 33.6
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 1.6e-60 238.4 587 34.6
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.8e-56 224.9 496 36.5
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 5.5e-53 213.4 678 31.9
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 9.7e-50 202.6 789 29.9
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 5.3e-48 196.8 747 27.8
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.1e-45 189.1 304 40.8
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 9.4e-45 186.0 770 28.4
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 2.1e-44 184.9 359 38.7
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 5.2e-43 180.3 511 32.3
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 2.6e-42 177.9 335 36.7
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.8e-41 174.5 284 42.3
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 4.8e-41 173.7 313 37.7
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 4.8e-41 173.7 315 38.1
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.3e-41 173.3 358 36.3
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 4.1e-40 170.6 371 34.5
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 5.3e-40 170.2 364 36.0
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 2.7e-39 167.9 312 35.3
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.5e-39 167.5 306 37.3
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 4.5e-39 167.2 648 28.5
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.7e-38 165.2 364 35.2
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.8e-38 164.1 435 32.4
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 8.5e-38 162.9 364 33.5
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 1.5e-37 162.2 283 38.2
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 9.4e-37 159.5 293 37.9
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 1.2e-36 159.1 285 38.9
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 2.1e-36 158.3 358 34.6
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 3.6e-36 157.5 309 35.0
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.6e-36 157.5 318 35.5
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.4e-35 155.6 284 37.7
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.4e-35 155.6 284 37.7
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 5.2e-35 153.7 306 36.3
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.2e-34 152.5 306 35.9
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 2.2e-33 148.3 286 36.4
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.3e-33 146.7 299 36.8
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 7.0e-32 143.3 362 33.1
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 4.5e-31 140.6 282 36.5
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 7.7e-31 139.8 318 33.6
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 1.0e-30 139.4 307 34.9
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 1.3e-30 139.0 250 39.6
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.3e-30 139.0 310 34.2
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 1.7e-30 138.7 316 33.9
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 1.7e-30 138.7 282 36.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.1e-29 136.0 310 34.8
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 2.5e-29 134.8 323 30.3
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.2e-29 134.4 311 33.1
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 5.5e-29 133.7 300 33.3
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 9.5e-29 132.9 307 33.6
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 2.8e-28 131.3 249 38.6
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 3.6e-28 131.0 273 34.8
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 4.7e-28 130.6 281 34.9
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 8.0e-28 129.8 353 30.0
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 8.0e-28 129.8 273 34.4
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 1.8e-27 128.6 274 33.9
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 2.3e-27 128.3 672 24.9
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 2.3e-27 128.3 356 30.9
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 6.8e-27 126.7 295 33.2
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 8.8e-27 126.3 272 31.6
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 8.8e-27 126.3 301 32.9
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 5.7e-26 123.6 326 33.1
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 2.2e-25 121.7 298 32.2
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 4.9e-25 120.6 328 32.0
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 4.9e-25 120.6 281 32.4
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 8.3e-25 119.8 282 34.4
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 1.1e-24 119.4 365 29.6
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.4e-24 119.0 303 30.4
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 9.2e-24 116.3 218 37.6
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 5.9e-23 113.6 297 30.0
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 7.8e-23 113.2 310 30.3
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.0e-22 112.8 321 32.1
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 1.3e-22 112.5 312 31.1
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 1.3e-22 112.5 170 40.0
Medtr2g094980 Medicago truncatula HOM05D001944 ORTHO05D011318 1.7e-22 112.1 172 41.9
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.8e-22 110.9 313 31.6
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 6.6e-22 110.2 260 34.6
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 6.6e-22 110.2 315 29.5
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 1.1e-21 109.4 340 29.1
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.9e-21 108.6 324 29.9
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 3.3e-21 107.8 535 24.7
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.3e-21 107.8 311 29.3
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 3.3e-21 107.8 363 29.2
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 4.3e-21 107.5 296 30.1
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 7.3e-21 106.7 268 31.0
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 7.3e-21 106.7 291 29.9
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 1.6e-20 105.5 303 30.0
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 1.6e-20 105.5 458 26.4
TPR.G9836 Trifolium pratense HOM05D001944 ORTHO05D011318 2.1e-20 105.1 302 31.5
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 3.6e-20 104.4 276 30.8
Hma1.2p1_0058F.1_g032350 Hydrangea macrophylla HOM05D001944 ORTHO05D011318 3.6e-20 104.4 132 47.0
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 4.7e-20 104.0 271 33.2
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 4.7e-20 104.0 286 31.1
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 4.7e-20 104.0 256 32.8
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 6.1e-20 103.6 303 29.4
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 8.0e-20 103.2 289 29.4
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.0e-19 102.8 311 31.5
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 1.0e-19 102.8 315 31.1
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 2.3e-19 101.7 102 52.9
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 3.0e-19 101.3 169 40.2
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 8.9e-19 99.8 116 44.0
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 2.0e-18 98.6 120 44.2
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 4.4e-18 97.4 271 32.8
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 7.5e-18 96.7 252 32.1
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 1.7e-17 95.5 252 32.1
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 2.2e-17 95.1 258 33.3
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 2.9e-17 94.7 295 31.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 6.4e-17 93.6 307 29.0
TPR.G6160 Trifolium pratense HOM05D001944 ORTHO05D011318 8.3e-17 93.2 291 33.0
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.1e-16 92.8 327 27.5
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.8e-16 92.0 261 28.7
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 1.8e-16 92.0 112 44.6
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 3.2e-16 91.3 298 28.5
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.1e-16 90.9 279 28.0
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 5.4e-16 90.5 297 28.3
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 9.2e-16 89.7 266 34.6
Lj1A201T35 Lonicera japonica HOM05D001944 ORTHO05D011318 1.6e-15 89.0 203 33.5
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.5e-15 87.8 279 27.2
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 5.9e-15 87.0 640 22.5
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 7.8e-15 86.7 314 27.7
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 1.0e-14 86.3 260 30.0
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 3.9e-14 84.3 113 43.4
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 3.9e-14 84.3 347 25.9
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 6.6e-14 83.6 271 25.8
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 1.5e-13 82.4 105 39.0
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 1.9e-13 82.0 124 36.3
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 2.5e-13 81.6 260 27.7
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 3.3e-13 81.3 295 25.4
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 5.6e-13 80.5 117 39.3
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 7.3e-13 80.1 324 27.2
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 1.6e-12 79.0 248 27.8
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.6e-12 79.0 323 26.9
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 2.1e-12 78.6 324 27.2
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 8.0e-12 76.6 103 41.7
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.4e-11 75.9 273 26.7
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 1.4e-11 75.9 107 41.1
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 2.3e-11 75.1 96 40.6
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 2.3e-11 75.1 244 29.5
HPP92_003457 Vanilla planifolia HOM05D001944 ORTHO05D011318 2.3e-11 75.1 108 39.8
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 3.1e-11 74.7 96 42.7
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 3.1e-11 74.7 96 39.6
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 4.0e-11 74.3 99 40.4
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 4.0e-11 74.3 99 40.4
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 5.2e-11 73.9 106 37.7
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 5.2e-11 73.9 141 33.3
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 5.2e-11 73.9 108 38.0
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 1.2e-10 72.8 237 31.2
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 1.5e-10 72.4 113 36.3
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 1.5e-10 72.4 241 27.4
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 2.6e-10 71.6 101 36.6
Zm00001eb229660 Zea mays HOM05D013792 ORTHO05D011318 2.6e-10 71.6 120 34.2
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.4e-10 71.2 96 38.5
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 3.4e-10 71.2 141 35.5
HanXRQChr01g0019281 Helianthus annuus HOM05D001944 ORTHO05D002405 4.4e-10 70.9 78 44.9
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 5.8e-10 70.5 247 27.5
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 2.2e-09 68.6 110 36.4
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 2.2e-09 68.6 108 38.9
Zm00001eb036690 Zea mays HOM05D013792 ORTHO05D011318 4.1e-08 64.3 98 37.8
Zm00001eb241250 Zea mays HOM05D013792 ORTHO05D011318 4.1e-08 64.3 98 37.8
Zm00001eb399740 Zea mays HOM05D013792 ORTHO05D011318 4.1e-08 64.3 98 37.8
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.2e-07 62.8 70 51.4
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 1.6e-07 62.4 176 29.5
Zm00001eb269670 Zea mays HOM05D013792 ORTHO05D011318 1.7e-06 58.9 98 34.7
Zm00001eb109010 Zea mays HOM05D013792 ORTHO05D011318 3.0e-06 58.2 98 34.7
Lsat_1_v5_gn_0_24581 Lactuca sativa HOM05D001944 ORTHO05D002405 3.9e-06 57.8 71 40.8


User provided reference genes

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