Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.9e-284 979.9 489 100.0
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-263 911.8 491 93.9
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.7e-261 905.6 491 93.5
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-231 806.6 491 83.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-226 790.0 491 83.5
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-182 642.9 435 79.5
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.5e-161 573.5 504 60.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.0e-161 573.2 495 60.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 7.4e-161 571.2 504 60.9
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.1e-159 567.4 503 60.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.4e-159 567.0 499 59.9
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.4e-159 567.0 503 60.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.4e-159 567.0 495 59.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.4e-159 566.2 504 59.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.1e-159 565.5 499 59.7
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.0e-159 564.7 499 59.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.6e-158 563.5 495 59.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.0e-158 563.1 495 60.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.0e-158 563.1 492 60.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.6e-158 562.8 494 59.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.5e-158 562.4 510 58.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 5.9e-158 561.6 494 59.7
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 5.9e-158 561.6 494 59.7
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 5.9e-158 561.6 494 59.7
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 5.9e-158 561.6 515 58.8
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 7.7e-158 561.2 494 59.7
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 7.7e-158 561.2 494 59.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.7e-158 561.2 492 61.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.0e-157 560.8 494 60.7
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.0e-157 560.8 503 58.6
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.3e-157 560.5 499 59.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.2e-157 559.7 499 60.1
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.8e-157 558.9 488 60.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 3.8e-157 558.9 499 59.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.8e-157 558.9 496 61.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 5.0e-157 558.5 494 59.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 5.0e-157 558.5 494 59.5
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.0e-157 558.5 499 59.1
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 6.5e-157 558.1 494 59.1
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.1e-156 557.4 501 59.1
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.1e-156 557.4 496 58.9
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-156 557.4 490 61.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.1e-156 557.4 503 59.2
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.1e-156 557.4 499 59.1
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-156 557.4 499 58.9
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.5e-156 557.0 499 59.1
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.5e-156 557.0 499 59.1
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.9e-156 556.6 494 58.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.9e-156 556.6 503 59.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-156 556.2 492 61.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 4.2e-156 555.4 494 58.9
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.5e-156 555.1 499 58.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 5.5e-156 555.1 494 59.3
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 7.2e-156 554.7 499 58.7
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 9.4e-156 554.3 503 57.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-155 553.9 494 58.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.2e-155 553.9 494 58.9
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.2e-155 553.9 503 58.4
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.2e-155 553.9 510 58.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.2e-155 553.9 503 57.7
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.6e-155 553.5 503 58.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.7e-155 552.7 494 59.1
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 6.1e-155 551.6 494 58.9
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.0e-154 550.8 494 59.3
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-154 550.4 492 58.5
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.4e-154 550.4 499 59.3
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.8e-154 550.1 499 59.1
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.3e-154 549.7 494 58.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 2.3e-154 549.7 499 58.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.3e-154 549.7 501 59.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 5.2e-154 548.5 490 59.0
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.2e-154 548.5 499 58.9
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.8e-154 547.7 528 55.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.5e-153 547.0 503 55.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-153 547.0 500 60.0
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.3e-153 545.8 499 58.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 9.7e-153 544.3 495 58.4
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.3e-152 543.9 495 58.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-152 543.9 502 59.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.7e-152 543.5 510 57.5
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.7e-152 543.5 504 58.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.7e-152 543.5 496 58.7
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-152 542.3 494 57.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.3e-152 541.6 500 57.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 8.2e-152 541.2 491 59.1
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.2e-152 541.2 494 58.9
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-151 539.7 514 56.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.4e-151 539.7 523 55.8
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.1e-151 538.9 496 58.3
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.3e-151 538.5 503 55.5
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.6e-150 537.0 490 58.2
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.0e-150 536.6 494 57.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.7e-150 534.6 494 57.1
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-149 533.1 475 58.5
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.2e-148 528.9 507 56.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 7.2e-148 528.1 497 56.1
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.2e-147 527.3 503 54.9
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.6e-147 525.8 475 57.7
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 3.6e-147 525.8 504 55.4
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.3e-146 523.1 508 56.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 5.2e-146 521.9 503 54.9
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.7e-145 518.5 499 55.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-144 517.3 490 55.9
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.3e-144 515.0 341 80.1
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 3.1e-143 512.7 494 55.5
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 4.1e-143 512.3 458 58.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 7.2e-140 501.5 458 59.2
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 4.7e-139 498.8 484 56.6
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.7e-139 498.8 495 54.1
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 3.0e-138 496.1 495 53.7
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 6.8e-138 495.0 516 52.3
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 8.8e-138 494.6 495 54.5
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.0e-137 493.4 494 54.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.6e-137 493.0 443 58.7
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.0e-133 481.1 496 54.4
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.8e-133 479.2 495 51.1
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.3e-132 476.1 452 58.0
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.8e-130 470.3 401 60.6
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 6.4e-128 461.8 401 60.6
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.6e-125 451.8 506 48.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.6e-123 446.0 491 47.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.8e-122 443.7 406 57.1
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 4.4e-121 439.1 491 48.5
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.7e-120 436.0 458 52.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.0e-118 430.3 490 48.8
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.0e-117 425.6 487 50.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.7e-112 410.6 477 49.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.5e-108 396.7 500 46.8
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.3e-106 390.2 387 51.2
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.6e-102 377.5 487 47.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.1e-99 365.2 449 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.8e-98 364.0 340 55.6
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-96 357.5 323 58.2
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-91 340.9 483 44.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 8.4e-88 328.6 326 57.1
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.2e-80 303.9 489 38.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.0e-72 278.5 545 33.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.8e-59 233.0 438 34.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 7.7e-57 225.7 526 33.1
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.2e-47 193.4 159 59.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.0e-33 147.9 143 57.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 9.4e-31 139.0 103 63.1
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 8.3e-27 125.9 484 26.9
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 5.9e-25 119.8 83 72.3
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.8e-22 110.9 95 61.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.1e-22 109.8 271 31.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.3e-21 107.8 95 60.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.3e-19 102.1 224 34.8
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-18 98.2 373 26.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.9e-17 93.2 119 42.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.0e-16 92.4 95 52.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.3e-16 91.3 68 73.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.7e-14 83.6 83 55.4
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-11 75.5 71 49.3
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 6.6e-08 63.2 69 44.9
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 4.3e-07 60.5 45 53.3
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-06 58.5 54 46.3


User provided reference genes

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