Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 2141.3 1134 100.0
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1992.6 1113 95.7
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1991.9 1113 95.7
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1872.1 1111 89.7
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1619.4 1115 76.5
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1595.5 1113 75.1
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1436.8 1111 67.3
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1403.7 1161 66.7
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1383.2 1118 66.0
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1350.5 1106 66.2
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1345.9 1112 65.7
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1340.5 1112 65.1
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1337.0 1114 64.3
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1331.6 1112 63.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1320.4 1111 64.8
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1317.0 1004 67.3
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1308.1 1110 64.3
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1304.3 1113 63.2
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1302.0 1114 64.5
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1300.8 1116 64.3
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1293.9 1109 63.4
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1284.2 1114 63.9
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1278.1 1121 61.5
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1274.6 1136 60.4
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1268.1 1120 61.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1266.5 1119 60.2
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1259.6 1123 60.3
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1258.4 1094 62.2
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1256.5 1118 60.8
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1254.2 1070 64.4
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1253.8 1118 59.7
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1252.3 1115 60.4
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1249.6 1112 61.2
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1244.2 1109 61.4
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1241.1 1119 60.6
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1239.6 1118 60.9
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1237.2 1107 61.3
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1237.2 1112 60.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1234.6 1124 62.7
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1228.0 1078 61.6
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1222.6 1122 60.5
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1213.7 1110 60.5
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1205.3 1122 60.2
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1194.5 1090 58.3
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1176.0 1108 57.7
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1168.7 1212 54.1
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1155.6 1106 56.9
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1155.2 1107 56.8
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1149.0 1114 56.9
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1146.3 1107 56.5
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1143.3 1132 57.8
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1135.2 1109 58.2
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1133.6 1113 56.3
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1129.4 1108 56.1
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1123.6 1093 57.7
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1120.1 1112 55.3
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1114.0 1124 54.7
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1110.1 1112 55.4
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1106.7 1132 54.8
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1102.8 1106 56.3
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1095.5 1118 55.6
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1095.1 1147 53.9
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1088.9 1123 55.2
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1088.9 1113 57.7
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1087.4 1108 55.1
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1083.9 1129 55.7
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1081.2 1089 56.1
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1079.3 1025 55.5
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1075.1 1109 54.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.0e-309 1067.0 1111 54.9
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 8.8e-306 1053.9 1116 53.9
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 5.7e-305 1051.2 1118 54.1
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 2.8e-304 1048.9 1118 53.9
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 2.0e-302 1042.7 1105 53.7
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 1.3e-301 1040.0 1057 55.3
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 3.9e-298 1028.5 1188 51.8
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.6e-297 1025.8 1109 51.0
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.5e-284 983.4 1110 49.5
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 6.8e-282 974.5 1116 49.9
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.6e-278 963.4 1117 49.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 9.8e-273 944.1 1126 50.4
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.1e-268 930.6 1133 51.1
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.4e-226 790.8 1134 42.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.6e-219 767.3 668 59.3
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 3.1e-218 763.1 516 74.4
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.9e-216 756.5 596 66.8
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.0e-213 748.0 1140 40.4
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.0e-213 748.0 1140 40.4
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.9e-213 746.1 736 56.9
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.9e-197 693.0 1035 39.1
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.1e-183 648.3 1027 37.1
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 2.7e-182 643.7 633 57.0
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.4e-172 609.8 1087 35.0
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 4.4e-156 556.6 435 64.8
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.5e-135 487.6 430 59.1
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 7.3e-111 406.4 439 53.5
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.2e-105 389.0 466 45.3
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.0e-104 386.0 335 66.9
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 5.3e-101 373.6 826 30.9
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.3e-88 332.4 448 49.1
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.0e-84 318.5 372 50.5
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.9e-82 312.0 220 65.5
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 1.7e-78 298.9 407 45.2
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 6.3e-78 297.0 303 52.1
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.5e-75 287.0 460 37.2
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.6e-65 255.8 793 28.2
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 2.4e-61 241.9 972 26.9
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.0e-56 226.5 674 28.3
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.2e-37 161.8 87 88.5
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.2e-36 159.8 158 53.8
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.6e-33 148.3 138 57.2
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.4e-32 146.4 206 45.1
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.9e-30 138.7 119 52.1
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.6e-28 132.9 189 44.4
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 5.6e-26 124.4 151 46.4
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.8e-25 122.1 108 50.0
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 8.9e-24 117.1 104 58.7
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 2.0e-23 115.9 140 48.6
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 5.8e-23 114.4 90 64.4
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.2e-22 112.5 112 54.5
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.9e-22 111.3 138 42.8
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.1e-21 110.2 165 56.4
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.1e-21 107.5 92 51.1
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.1e-20 105.9 101 51.5
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 1.0e-19 103.6 117 47.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 1.1e-18 100.1 133 42.1
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 3.6e-17 95.1 184 51.6
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.1e-16 92.0 661 21.6
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 4.0e-16 91.7 218 45.4
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 4.0e-16 91.7 677 21.6
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 6.8e-16 90.9 135 43.0
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 2.6e-15 89.0 133 39.1
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 1.7e-14 86.3 84 50.0
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 1.7e-14 86.3 84 50.0
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.4e-13 83.2 679 21.1
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.2e-13 82.0 675 20.9
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 3.2e-13 82.0 662 21.1
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 4.1e-13 81.6 65 55.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 6.0e-12 77.8 48 72.9
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 2.8e-09 68.9 449 21.2
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.1e-08 67.0 544 20.4
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 8.9e-08 63.9 62 51.6
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 5.8e-07 61.2 62 50.0
Zm00001eb383150 Zea mays HOM05D005298 ORTHO05D030733 5.8e-07 61.2 61 47.5
Zm00001eb082360 Zea mays HOM05D005298 ORTHO05D030733 7.6e-07 60.8 56 51.8
A03p46190 Brassica napus HOM05D003214 ORTHO05D004330 3.8e-06 58.5 259 25.9
A09p11160 Brassica napus HOM05D003214 ORTHO05D004330 8.4e-06 57.4 256 24.6


User provided reference genes

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