Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 6.9e-37 156.8 77 100.0
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 6.9e-37 156.8 77 100.0
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 2.6e-36 154.8 77 98.7
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.6e-36 154.8 77 98.7
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 8.4e-35 149.8 77 94.8
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 2.0e-28 128.6 70 88.6
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 3.4e-28 127.9 73 87.7
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 7.6e-28 126.7 70 87.1
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 1.3e-27 125.9 64 92.2
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 1.7e-27 125.6 73 80.8
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 2.2e-27 125.2 67 88.1
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 2.2e-27 125.2 73 82.2
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 2.9e-27 124.8 64 89.1
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 3.8e-27 124.4 74 79.7
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.9e-27 124.0 68 86.8
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 6.5e-27 123.6 67 88.1
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 8.4e-27 123.2 62 93.5
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 1.4e-26 122.5 71 81.7
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 1.4e-26 122.5 64 89.1
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 1.4e-26 122.5 60 95.0
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 1.4e-26 122.5 72 79.2
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 2.5e-26 121.7 68 82.4
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 3.2e-26 121.3 64 89.1
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.2e-26 121.3 64 89.1
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 3.2e-26 121.3 72 81.9
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 4.2e-26 120.9 67 86.6
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 4.2e-26 120.9 69 84.1
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 4.2e-26 120.9 75 80.0
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 4.2e-26 120.9 69 82.6
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 4.2e-26 120.9 76 75.0
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 5.5e-26 120.6 76 78.9
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 7.1e-26 120.2 68 83.8
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 9.3e-26 119.8 62 93.5
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 9.3e-26 119.8 71 80.3
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 1.6e-25 119.0 59 91.5
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.6e-25 119.0 74 74.3
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 1.6e-25 119.0 72 80.6
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 2.1e-25 118.6 71 80.3
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 2.1e-25 118.6 58 98.3
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 2.1e-25 118.6 68 80.9
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 2.1e-25 118.6 71 78.9
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.7e-25 118.2 62 90.3
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 2.7e-25 118.2 68 80.9
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 4.6e-25 117.5 71 77.5
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 4.6e-25 117.5 72 77.8
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 4.6e-25 117.5 60 91.7
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 7.9e-25 116.7 58 93.1
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 1.3e-24 115.9 58 93.1
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 1.8e-24 115.5 68 79.4
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 2.3e-24 115.2 58 91.4
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 2.3e-24 115.2 70 78.6
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 3.0e-24 114.8 57 93.0
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.9e-24 114.4 64 81.2
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.9e-24 114.4 64 81.2
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 5.1e-24 114.0 65 80.0
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 6.7e-24 113.6 71 78.9
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 8.7e-24 113.2 68 77.9
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.9e-23 112.1 57 89.5
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.9e-23 112.1 67 83.6
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 4.3e-23 110.9 67 79.1
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 4.3e-23 110.9 67 79.1
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 5.7e-23 110.5 67 80.6
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 9.6e-23 109.8 67 77.6
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.6e-22 109.0 67 76.1
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-22 107.8 66 75.8
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-22 107.8 66 75.8
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 3.7e-22 107.8 66 75.8
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 3.7e-22 107.8 66 75.8
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 3.7e-22 107.8 57 89.5
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 4.8e-22 107.5 66 75.8
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 4.8e-22 107.5 63 81.0
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 4.8e-22 107.5 62 83.9
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 6.3e-22 107.1 60 85.0
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 6.3e-22 107.1 98 59.2
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 6.3e-22 107.1 59 84.7
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.1e-21 106.3 60 83.3
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 1.4e-21 105.9 62 80.6
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.8e-21 105.5 74 70.3
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 2.4e-21 105.1 62 80.6
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 3.1e-21 104.8 74 67.6
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 4.1e-21 104.4 62 79.0
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 1.2e-20 102.8 57 84.2
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 1.5e-20 102.4 52 90.4
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 1.5e-20 102.4 52 90.4
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 1.5e-20 102.4 52 90.4
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 1.5e-20 102.4 60 81.7
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.6e-20 101.7 74 66.2
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 3.4e-20 101.3 52 88.5
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 3.4e-20 101.3 52 88.5
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 3.8e-19 97.8 59 81.4
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 3.8e-19 97.8 91 58.2
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 6.5e-19 97.1 55 83.6
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 2.5e-18 95.1 65 75.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.2e-18 94.7 59 79.7
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 7.2e-18 93.6 64 75.0
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 7.2e-18 93.6 56 75.0
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 9.3e-18 93.2 44 97.7
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 2.7e-17 91.7 49 87.8
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 3.6e-17 91.3 54 75.9
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 4.6e-17 90.9 44 95.5
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.0e-16 89.7 61 73.8
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 3.9e-16 87.8 44 90.9
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 3.9e-16 87.8 42 95.2
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 6.7e-16 87.0 44 88.6
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 4.3e-15 84.3 44 86.4
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 7.4e-15 83.6 56 73.2
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.8e-13 79.0 53 73.6
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.8e-13 79.0 53 73.6
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.0e-12 75.5 37 94.6
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 1.4e-10 69.3 71 53.5
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.2e-10 68.2 46 67.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.6e-09 64.3 34 82.4
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 4.6e-09 64.3 34 82.4
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 7.9e-09 63.5 30 90.0
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 5.7e-07 57.4 57 56.1
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 9.7e-07 56.6 58 56.9


User provided reference genes

Program Settings