Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.1e-89 332.8 233 100.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 9.6e-74 280.8 249 75.5
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.6e-63 246.1 237 75.9
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.4e-61 240.4 239 69.9
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 5.3e-56 221.9 235 67.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 6.9e-48 194.9 233 52.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.5e-47 193.7 233 53.6
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 6.5e-46 188.3 237 57.4
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.2e-45 186.0 233 57.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.2e-45 186.0 232 47.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.8e-43 180.3 233 53.2
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.8e-43 180.3 248 59.7
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.9e-43 179.1 243 59.3
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.7e-42 175.3 233 53.2
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.6e-41 173.7 245 57.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.2e-41 173.3 228 53.9
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.8e-41 172.9 233 53.2
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 4.8e-41 172.2 243 56.8
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.4e-40 170.6 233 52.4
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-40 170.2 233 50.6
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.4e-40 169.9 231 57.1
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.4e-40 169.9 231 57.1
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 9.0e-40 167.9 240 58.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.5e-39 167.2 235 46.0
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 7.6e-39 164.9 233 58.4
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.3e-38 164.1 234 57.3
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.3e-38 164.1 226 54.4
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.2e-38 163.3 233 49.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.9e-38 162.9 233 52.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.8e-38 162.5 239 54.8
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.5e-38 161.8 242 53.7
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.5e-38 161.4 244 53.3
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-37 161.0 234 49.6
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-37 161.0 245 52.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-37 161.0 230 53.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.9e-37 160.2 233 47.2
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.2e-37 159.5 233 41.2
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.2e-37 159.5 234 53.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 7.2e-37 158.3 240 57.9
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.2e-36 157.5 239 50.6
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.7e-36 156.4 251 47.0
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.6e-36 156.0 237 64.1
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 4.6e-36 155.6 244 47.1
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 7.9e-36 154.8 231 42.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.8e-35 153.7 257 46.7
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.3e-35 153.3 248 42.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.9e-35 152.5 229 59.4
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.9e-35 152.5 229 49.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 5.1e-35 152.1 230 42.6
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-35 151.8 235 47.2
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.1e-34 151.0 233 53.2
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.5e-34 150.6 233 55.4
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.9e-34 150.2 245 52.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.5e-34 149.8 240 42.9
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.5e-34 149.8 238 52.9
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-34 149.8 239 50.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.3e-34 149.4 237 52.7
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.3e-34 149.4 244 53.7
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 5.7e-34 148.7 235 54.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 7.4e-34 148.3 247 41.3
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.3e-33 147.5 250 46.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.7e-33 147.1 230 40.9
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.8e-33 146.4 273 41.4
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.4e-32 144.1 228 61.0
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.4e-32 144.1 232 44.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.1e-32 142.9 235 54.9
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-32 142.5 246 58.5
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.3e-32 142.1 247 56.7
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.3e-32 142.1 230 52.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.6e-31 139.8 243 47.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.4e-31 139.4 229 44.5
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.4e-31 139.4 241 37.8
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.9e-31 138.7 230 43.5
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 7.7e-31 138.3 229 56.8
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 6.5e-30 135.2 226 37.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-29 134.4 241 50.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.4e-29 134.0 240 47.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.9e-29 133.7 234 50.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.2e-29 132.9 230 36.5
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.2e-29 132.5 235 51.9
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 7.2e-29 131.7 252 44.8
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 9.4e-29 131.3 268 42.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.2e-28 131.0 240 50.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.2e-28 131.0 226 57.1
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.7e-28 129.0 232 53.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-28 128.6 241 50.6
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 6.1e-28 128.6 233 51.1
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 6.1e-28 128.6 151 55.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.9e-28 128.3 233 39.5
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.0e-27 127.9 253 35.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.0e-27 127.9 238 48.3
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.0e-27 127.9 231 61.5
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-27 127.5 243 50.2
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.8e-27 127.1 228 52.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.3e-27 126.7 240 49.6
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.3e-27 126.7 222 52.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.9e-27 125.9 229 49.3
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 5.1e-27 125.6 237 40.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.1e-27 125.6 231 37.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.0e-26 123.6 239 43.5
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.3e-26 122.9 229 46.7
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.4e-26 121.7 170 57.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-25 120.9 248 49.2
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-25 120.6 246 47.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-25 119.8 248 48.8
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-25 119.8 248 48.8
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.8e-25 119.8 233 35.6
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.7e-25 119.4 227 57.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 3.7e-25 119.4 159 44.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.8e-25 119.0 223 45.7
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 8.2e-25 118.2 157 65.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-24 117.9 233 47.2
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.4e-24 117.5 164 57.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.8e-24 117.1 227 39.6
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-24 116.7 241 47.7
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-24 116.3 229 47.6
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-24 116.3 247 42.1
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-24 116.3 225 48.0
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 4.1e-24 115.9 225 48.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.3e-24 115.5 228 46.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.9e-24 115.2 165 60.0
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.2e-23 114.4 233 50.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-23 114.0 246 45.9
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.5e-23 114.0 233 45.9
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-23 113.6 225 47.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.0e-23 113.6 228 35.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.5e-23 112.5 240 43.8
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.5e-23 112.5 244 40.2
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.9e-23 112.1 173 59.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 5.9e-23 112.1 229 54.1
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.0e-22 111.3 237 36.3
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-22 110.9 229 39.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.7e-22 110.5 227 36.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 3.8e-22 109.4 227 46.7
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 6.5e-22 108.6 228 45.2
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 6.5e-22 108.6 239 43.1
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-21 107.1 224 32.6
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.5e-21 105.5 243 46.5
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 7.2e-21 105.1 229 37.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 9.4e-21 104.8 245 46.1
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-20 104.4 224 32.6
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-20 104.4 224 32.6
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.2e-20 104.4 229 42.4
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.2e-20 104.4 242 35.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-19 100.1 229 38.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.9e-19 99.4 154 47.4
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 6.7e-19 98.6 229 38.4
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 6.7e-19 98.6 154 42.9
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-18 97.4 229 37.6
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-18 96.7 160 38.1
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 5.7e-18 95.5 151 47.0
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.8e-17 93.2 242 34.7
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-17 92.4 224 30.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-17 92.4 224 30.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 4.8e-17 92.4 224 30.4
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.0e-15 87.0 113 49.6
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.7e-15 85.1 175 42.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.7e-14 84.0 220 28.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-14 83.6 157 51.6
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-14 83.6 157 51.6
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-14 83.6 157 51.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-14 83.6 157 51.6
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.6e-12 76.3 177 44.6
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.0e-11 74.7 230 39.6
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.4e-11 74.3 230 39.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.8e-11 73.9 230 40.9
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.8e-11 71.6 44 68.2
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 8.8e-11 71.6 239 28.5
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.2e-09 67.0 157 46.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.4e-08 63.5 35 74.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.4e-08 63.5 68 41.2
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.5e-07 59.3 144 29.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 7.7e-07 58.5 29 86.2
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.3e-06 57.8 144 29.2


User provided reference genes

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