Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1614.0 858 100.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1448.3 858 91.7
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 0.0e+00 1300.4 858 85.5
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 0.0e+00 1167.5 858 77.6
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1165.6 858 79.7
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 9.3e-300 1033.5 865 66.1
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 4.5e-238 828.6 769 57.2
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 4.9e-232 808.5 893 51.2
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.3e-229 800.4 786 55.7
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 7.3e-228 794.7 787 56.8
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.4e-226 790.4 807 54.2
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 5.2e-226 788.5 808 58.8
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.4e-225 785.8 776 56.3
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.4e-225 785.8 781 54.3
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 3.4e-225 785.8 796 57.4
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.4e-225 785.4 789 54.4
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.5e-222 775.8 777 56.6
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 3.0e-221 772.7 674 58.8
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 3.9e-221 772.3 863 50.4
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 5.0e-221 771.9 782 55.9
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.6e-221 771.5 790 55.1
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.0e-218 764.2 870 49.5
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 5.2e-218 761.9 688 57.6
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.5e-217 760.4 680 57.5
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.4e-217 758.8 677 58.1
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 5.8e-217 758.4 698 57.7
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.5e-217 758.1 645 59.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.7e-216 756.9 786 56.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 4.9e-216 755.4 780 53.1
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.4e-215 753.1 791 55.4
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.2e-215 752.7 646 60.2
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.2e-214 750.7 677 57.2
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.0e-213 746.1 631 59.9
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.8e-210 736.9 656 62.8
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-207 727.2 764 51.7
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.4e-207 726.5 777 51.6
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 3.2e-207 726.1 644 59.3
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 4.1e-207 725.7 642 57.6
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 5.4e-207 725.3 767 51.4
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.2e-206 724.2 714 54.3
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 3.9e-205 719.2 626 59.1
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 8.6e-205 718.0 767 53.8
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.1e-204 717.6 704 55.1
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.1e-204 717.6 795 51.8
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.5e-204 717.2 702 54.6
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.3e-204 715.7 768 54.0
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 8.1e-203 711.4 783 53.9
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 3.1e-202 709.5 663 55.1
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.0e-202 709.1 646 56.8
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 6.8e-202 708.4 778 53.0
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.0e-201 706.8 594 61.1
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.3e-200 704.1 778 52.1
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.1e-199 701.0 769 52.0
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.1e-199 701.0 785 50.8
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.2e-199 699.5 777 52.4
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 5.4e-199 698.7 779 51.1
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.0e-197 694.5 799 51.3
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 5.1e-197 692.2 775 52.4
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.5e-196 690.6 704 52.7
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 4.3e-196 689.1 702 52.7
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.4e-194 683.3 784 49.1
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.2e-193 681.0 626 56.9
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 2.0e-193 680.2 820 47.2
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 5.8e-193 678.7 795 49.7
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.3e-192 677.6 714 52.4
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 3.8e-192 676.0 647 53.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 6.0e-190 668.7 758 53.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.3e-189 666.8 620 55.3
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 4.0e-186 656.0 1126 39.3
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 7.6e-185 651.7 642 53.7
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 2.9e-184 649.8 752 47.3
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.1e-182 643.7 627 52.3
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-181 640.6 704 50.3
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.9e-180 637.1 649 52.7
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.9e-180 637.1 711 49.8
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 5.8e-177 625.5 861 44.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.8e-176 622.9 646 52.2
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.9e-175 620.5 547 57.6
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.3e-173 613.6 572 55.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-170 603.6 425 72.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 8.4e-168 595.1 642 50.3
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.5e-167 592.4 642 49.2
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 3.4e-161 573.2 625 48.3
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-160 571.2 640 48.3
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.8e-160 569.7 644 48.4
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.2e-159 566.2 710 47.5
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 3.3e-156 556.6 629 48.3
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.1e-154 551.6 635 47.4
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.0e-149 535.0 632 46.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.0e-148 530.8 775 42.5
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 3.7e-147 526.6 671 44.4
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.5e-144 515.4 691 43.8
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.5e-140 504.6 631 42.5
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.3e-139 501.5 642 43.1
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.1e-135 488.4 427 58.3
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 2.5e-135 487.3 572 47.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 4.2e-135 486.5 632 43.5
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 9.4e-135 485.3 435 58.9
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.2e-132 478.4 520 51.3
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.9e-119 434.5 667 37.6
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 1.2e-113 415.2 363 59.0
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.7e-113 414.1 335 62.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.7e-110 403.3 538 42.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 3.4e-108 397.1 719 37.7
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.9e-107 393.3 316 59.2
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 6.6e-104 382.9 428 55.4
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 2.3e-101 374.4 358 55.0
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.2e-99 367.9 335 54.9
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-95 355.1 603 41.0
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.4e-90 337.8 543 37.6
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.4e-85 322.0 507 38.3
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 2.6e-84 317.8 487 37.6
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.7e-83 315.1 314 54.8
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 2.4e-82 311.2 557 35.4
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 5.1e-80 303.5 564 37.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 7.3e-79 299.7 382 43.7
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.1e-78 298.1 531 35.6
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 8.1e-78 296.2 344 47.4
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 4.3e-71 273.9 461 44.0
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 8.4e-67 259.6 635 28.8
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 5.5e-58 230.3 204 59.3
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 8.2e-54 216.5 262 47.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.4e-53 215.7 146 70.5
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.5e-52 212.2 257 47.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 4.5e-52 210.7 175 56.0
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 3.2e-50 204.5 155 66.5
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.0e-48 199.5 151 64.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-48 199.1 197 52.3
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 9.7e-47 193.0 330 39.1
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.1e-45 189.5 155 60.6
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 3.1e-45 188.0 153 62.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 3.1e-45 188.0 249 44.2
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.0e-43 183.0 213 48.4
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 8.5e-43 179.9 191 52.4
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 3.2e-42 177.9 314 36.9
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 4.1e-37 161.0 305 37.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.8e-35 154.5 119 67.2
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-31 141.7 92 73.9
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 9.7e-31 139.8 84 78.6
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 5.3e-29 134.0 303 34.3
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 2.6e-28 131.7 82 72.0
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.4e-26 125.9 324 32.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.1e-25 122.1 92 63.0
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.7e-25 121.7 117 54.7
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.0e-24 119.8 243 34.6
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.8e-24 119.0 85 64.7
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-23 115.9 85 67.1
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.3e-23 114.8 106 59.4
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.1e-21 108.2 70 74.3
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-19 103.2 70 75.7
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.7e-17 95.1 86 53.5
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-14 85.9 96 47.9
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 3.2e-10 71.6 107 42.1
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-07 62.0 97 39.2


User provided reference genes

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