Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.0e-158 561.2 315 100.0
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.9e-154 549.3 315 97.5
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-154 549.3 315 97.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.2e-153 545.8 315 97.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-151 539.7 316 96.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.9e-149 532.7 315 95.2
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.4e-114 415.6 321 77.6
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.1e-112 410.6 278 77.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.5e-106 390.2 282 73.0
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.0e-102 377.5 286 69.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.5e-101 373.6 304 66.8
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.3e-101 372.5 290 68.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.6e-101 371.7 291 68.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 5.6e-101 371.7 333 70.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.9e-99 364.4 287 69.3
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.2e-98 364.0 298 69.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.2e-98 364.0 300 68.0
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.6e-98 362.8 287 68.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 2.2e-97 359.8 321 72.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.7e-97 359.0 284 68.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.9e-96 356.7 275 69.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.0e-95 353.2 298 65.1
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.0e-95 353.2 290 68.3
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 6.0e-95 351.7 289 68.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.0e-94 350.9 262 70.6
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 4.3e-93 345.5 291 65.3
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 4.3e-93 345.5 291 65.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.2e-92 344.0 327 68.8
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.1e-92 343.2 285 67.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.8e-92 342.8 278 68.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.7e-92 342.0 285 66.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 8.9e-91 337.8 289 66.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.0e-90 336.7 286 65.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.9e-90 334.3 286 64.3
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.3e-89 334.0 286 64.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.7e-89 332.4 272 67.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 5.4e-88 328.6 286 64.3
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 7.1e-88 328.2 288 64.6
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.5e-87 325.9 285 63.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 6.0e-87 325.1 294 62.9
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 6.6e-86 321.6 288 63.9
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.6e-84 317.0 321 65.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.8e-84 316.2 287 62.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 6.4e-81 305.1 275 63.3
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.4e-80 303.1 289 60.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 4.1e-80 302.4 285 62.8
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.3e-78 297.4 297 60.6
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.5e-77 293.9 271 62.4
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.3e-77 291.6 284 61.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 8.1e-76 288.1 305 57.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.0e-75 285.8 281 60.5
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 9.0e-75 284.6 280 58.9
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.0e-74 283.5 305 56.4
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 9.9e-74 281.2 279 59.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.9e-73 279.6 319 53.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.9e-73 279.6 319 53.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 3.8e-73 279.3 291 58.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.8e-73 279.3 287 57.5
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.4e-72 277.3 284 56.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.4e-72 276.6 284 57.4
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.2e-72 276.2 295 54.9
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.4e-72 275.4 286 55.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.1e-71 273.5 285 55.1
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.1e-71 273.5 283 55.8
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.6e-71 272.3 287 56.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 6.0e-71 271.9 292 56.8
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.3e-70 270.8 293 53.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.3e-70 270.8 286 56.3
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.3e-70 270.8 318 52.5
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.7e-70 270.4 293 53.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.7e-70 270.4 285 55.1
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.3e-70 270.0 284 56.7
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.9e-70 269.2 287 54.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.6e-70 268.5 233 64.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.7e-70 268.1 287 56.1
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.5e-69 267.3 285 56.1
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.5e-69 267.3 297 52.2
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.3e-69 266.2 290 55.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.3e-69 265.8 296 56.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.6e-69 265.4 285 57.5
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.6e-69 265.4 281 58.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 5.6e-69 265.4 285 55.1
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.1e-68 263.5 285 57.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.1e-68 263.5 290 54.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.8e-68 263.1 299 55.9
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.8e-68 263.1 281 57.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.6e-68 262.7 294 56.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 4.8e-68 262.3 288 54.2
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.8e-68 262.3 293 55.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 8.1e-68 261.5 293 52.6
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.1e-67 261.2 311 54.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.4e-67 260.8 290 53.8
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.8e-67 260.4 275 55.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.8e-67 260.4 283 54.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 9.0e-67 258.1 287 53.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.0e-66 256.9 289 54.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.5e-66 255.8 284 56.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 9.9e-66 254.6 296 55.1
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.7e-65 253.8 297 54.2
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.9e-65 253.1 269 53.2
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-65 252.7 280 52.1
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-64 251.1 284 54.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 7.1e-64 248.4 281 54.4
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 4.6e-63 245.7 306 51.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.0e-63 245.4 293 51.9
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.0e-62 244.6 293 53.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.9e-62 242.7 227 59.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.1e-62 242.3 286 51.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.7e-62 241.9 280 53.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 6.7e-62 241.9 274 56.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.3e-60 237.7 305 49.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.3e-60 237.7 276 52.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.8e-60 236.5 290 50.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 2.4e-59 233.4 326 43.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.4e-59 233.4 302 48.0
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 7.6e-58 228.4 254 55.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 7.6e-58 228.4 269 52.0
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 8.4e-57 224.9 281 51.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.2e-56 222.6 277 54.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 5.5e-56 222.2 289 50.2
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.7e-55 219.9 261 50.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.0e-54 216.5 282 50.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.3e-52 211.1 300 48.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.1e-52 210.3 296 47.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.5e-50 204.1 200 56.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.4e-50 203.0 222 55.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.5e-50 202.6 162 65.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.5e-50 202.6 278 47.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.8e-50 202.2 222 55.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.9e-48 197.2 222 55.4
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.6e-47 194.1 289 46.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.1e-47 193.7 159 64.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.0e-46 191.4 282 45.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 3.9e-46 189.5 135 70.4
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.7e-46 188.7 168 61.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 6.3e-44 182.2 275 46.2
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.3e-43 179.1 180 55.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.0e-43 178.3 269 43.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.9e-40 170.6 280 41.1
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.6e-39 166.4 162 60.5
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 8.2e-36 155.2 78 94.9
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.1e-35 153.3 152 57.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-34 150.6 264 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-33 147.1 116 60.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-33 147.1 116 60.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.8e-33 146.4 115 63.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.5e-33 145.6 227 44.9
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.5e-33 145.2 133 62.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.1e-32 144.8 266 40.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 4.2e-32 142.9 275 38.5
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.2e-32 142.1 213 43.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.1e-31 139.0 284 38.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.2e-23 114.8 114 49.1
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-20 103.2 172 41.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-18 97.1 134 49.3
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 8.5e-17 92.0 158 44.3
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.7e-15 87.0 110 54.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-14 84.7 48 81.2
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.2e-13 81.6 114 47.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.3e-13 80.1 159 43.4
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.2e-12 77.4 52 69.2
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 4.5e-10 69.7 142 38.0
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.9e-09 67.0 107 44.9
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 1.0e-06 58.5 36 72.2
Cre03.g154200 Chlamydomonas reinhardtii HOM05D004323 ORTHO05D005140 5.2e-06 56.2 114 37.7


User provided reference genes

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