Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1700 Fragaria x ananassa HOM05D003413 ORTHO05D004197 9.9e-77 290.0 146 100.0
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 3.1e-62 241.9 125 96.8
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 4.0e-62 241.5 125 96.0
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 4.0e-62 241.5 125 96.0
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.3e-60 236.5 125 94.4
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 7.1e-51 204.1 123 85.4
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 2.8e-47 192.2 123 80.5
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 1.5e-45 186.4 123 78.0
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 3.4e-45 185.3 123 76.4
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 3.4e-45 185.3 123 76.4
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 4.5e-45 184.9 123 75.6
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 5.8e-45 184.5 123 75.6
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 5.8e-45 184.5 123 75.6
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 7.6e-45 184.1 123 76.4
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 7.6e-45 184.1 123 75.6
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 7.6e-45 184.1 124 79.0
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 7.6e-45 184.1 123 76.4
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.0e-44 183.7 123 77.2
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.0e-44 183.7 124 76.6
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.0e-44 183.7 125 75.2
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 1.0e-44 183.7 122 77.9
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.3e-44 183.3 123 74.8
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 1.3e-44 183.3 124 77.4
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 1.7e-44 183.0 124 78.2
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 1.7e-44 183.0 123 74.8
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 1.7e-44 183.0 123 74.8
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 2.2e-44 182.6 123 75.6
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 2.9e-44 182.2 123 75.6
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 2.9e-44 182.2 125 74.4
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 3.8e-44 181.8 123 73.2
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 3.8e-44 181.8 123 74.0
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 3.8e-44 181.8 123 77.2
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 4.9e-44 181.4 123 74.8
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 4.9e-44 181.4 123 74.0
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 4.9e-44 181.4 123 74.8
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.0
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 74.8
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 76.4
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 6.5e-44 181.0 124 75.0
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 75.6
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 76.4
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 6.5e-44 181.0 136 72.8
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 6.5e-44 181.0 124 75.8
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 6.5e-44 181.0 123 76.4
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 6.5e-44 181.0 118 78.8
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 8.4e-44 180.6 123 74.8
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 8.4e-44 180.6 123 74.8
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 8.4e-44 180.6 123 76.4
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 1.1e-43 180.3 123 72.4
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 1.1e-43 180.3 122 75.4
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.1e-43 180.3 123 74.8
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.1e-43 180.3 123 74.0
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 1.1e-43 180.3 125 73.6
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 1.4e-43 179.9 123 74.0
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 1.4e-43 179.9 123 74.0
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 1.4e-43 179.9 123 74.0
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 2.5e-43 179.1 123 75.6
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.5e-43 179.1 123 75.6
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 2.5e-43 179.1 123 74.8
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 3.2e-43 178.7 123 75.6
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 3.2e-43 178.7 123 74.8
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 4.2e-43 178.3 123 76.4
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 4.2e-43 178.3 126 75.4
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 4.2e-43 178.3 126 75.4
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 5.5e-43 177.9 123 76.4
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 7.1e-43 177.6 123 72.4
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 7.1e-43 177.6 123 75.6
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 9.3e-43 177.2 124 75.8
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 9.3e-43 177.2 124 75.8
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 9.3e-43 177.2 123 74.0
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 9.3e-43 177.2 124 75.0
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 9.3e-43 177.2 125 72.8
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 1.2e-42 176.8 126 74.6
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 1.2e-42 176.8 123 74.0
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 1.6e-42 176.4 123 72.4
PGSC0003DMG400014972 Solanum tuberosum HOM05D003413 ORTHO05D004197 1.6e-42 176.4 124 75.0
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 2.1e-42 176.0 124 75.8
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 2.7e-42 175.6 123 72.4
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 2.7e-42 175.6 124 74.2
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 3.5e-42 175.3 125 71.2
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 4.6e-42 174.9 123 72.4
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 4.6e-42 174.9 123 73.2
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 4.6e-42 174.9 123 72.4
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 6.0e-42 174.5 116 75.9
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 6.0e-42 174.5 124 74.2
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 6.0e-42 174.5 125 72.0
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 6.0e-42 174.5 125 72.8
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 7.9e-42 174.1 123 72.4
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 7.9e-42 174.1 123 71.5
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 7.9e-42 174.1 123 71.5
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 7.9e-42 174.1 128 71.1
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 1.0e-41 173.7 98 86.7
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.0e-41 173.7 123 73.2
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 1.0e-41 173.7 123 71.5
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.3e-41 173.3 123 74.0
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 1.3e-41 173.3 120 74.2
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.8e-41 172.9 123 74.0
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.8e-41 172.9 124 74.2
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.8e-41 172.9 124 74.2
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 2.3e-41 172.6 125 70.4
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 3.0e-41 172.2 123 72.4
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 3.9e-41 171.8 98 85.7
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 3.9e-41 171.8 123 71.5
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 3.9e-41 171.8 123 73.2
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 3.9e-41 171.8 150 64.0
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 6.7e-41 171.0 123 72.4
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 6.7e-41 171.0 125 70.4
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 6.7e-41 171.0 106 81.1
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 8.7e-41 170.6 122 72.1
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 8.7e-41 170.6 123 74.0
Sopen03g016120 Solanum pennellii HOM05D003413 ORTHO05D004197 8.7e-41 170.6 128 71.1
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 1.1e-40 170.2 124 71.8
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 1.1e-40 170.2 123 70.7
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 1.5e-40 169.9 124 73.4
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 1.9e-40 169.5 122 70.5
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 1.9e-40 169.5 123 74.0
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 2.5e-40 169.1 95 87.4
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 2.5e-40 169.1 122 72.1
Ciclev10032238m.g Citrus clementina HOM05D003413 ORTHO05D004197 4.3e-40 168.3 123 69.1
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 5.7e-40 167.9 126 69.0
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 7.4e-40 167.5 123 70.7
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 9.7e-40 167.2 128 70.3
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 9.7e-40 167.2 125 68.8
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 9.7e-40 167.2 127 70.9
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 1.3e-39 166.8 95 85.3
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 1.6e-39 166.4 123 68.3
SHI04151 Sapria himalayana HOM05D003413 ORTHO05D004197 2.8e-39 165.6 124 72.6
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 6.3e-39 164.5 100 82.0
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 1.1e-38 163.7 125 71.2
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 2.4e-38 162.5 120 70.0
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 6.9e-38 161.0 123 68.3
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 6.9e-38 161.0 123 68.3
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.2e-37 160.2 122 70.5
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 1.2e-37 160.2 154 58.4
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 1.5e-37 159.8 123 67.5
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 2.6e-37 159.1 124 66.1
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.7e-36 156.4 122 68.9
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 3.8e-36 155.2 124 64.5
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 2.5e-35 152.5 94 78.7
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 3.2e-35 152.1 83 89.2
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 3.6e-34 148.7 94 74.5
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 7.9e-34 147.5 125 64.8
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 3.3e-32 142.1 89 75.3
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 1.7e-31 139.8 89 74.2
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 2.8e-31 139.0 167 49.7
Lsat_1_v5_gn_3_130100 Lactuca sativa HOM05D003413 ORTHO05D013393 3.7e-31 138.7 95 76.8
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 1.8e-30 136.3 91 72.5
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 5.3e-30 134.8 93 66.7
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 3.4e-29 132.1 123 59.3
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.7e-28 129.8 81 77.8
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 3.8e-28 128.6 94 63.8
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 3.0e-25 119.0 122 50.8
Cc07_g08060 Coffea canephora HOM05D003413 ORTHO05D004197 1.1e-19 100.5 80 63.8
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 8.0e-18 94.4 86 58.1
Cfa025082 Carpinus fangiana HOM05D003413 ORTHO05D124667 1.4e-17 93.6 71 62.0
TPR.G750 Trifolium pratense HOM05D003413 ORTHO05D029074 2.3e-17 92.8 84 59.5
BolC8t47970H Brassica oleracea HOM05D003413 ORTHO05D004197 2.0e-16 89.7 82 63.4
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 3.3e-16 89.0 41 97.6
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 7.4e-16 87.8 125 43.2
Solyc03g063450.2 Solanum lycopersicum HOM05D003413 ORTHO05D004197 4.8e-15 85.1 178 38.2
TPR.G26137 Trifolium pratense HOM05D003413 ORTHO05D004197 6.3e-15 84.7 40 97.5
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 8.2e-15 84.3 53 81.1
MD06G1053500 Malus domestica HOM05D003413 ORTHO05D029074 1.4e-14 83.6 63 73.0
QL05p055614 Quercus lobata HOM05D003413 ORTHO05D004197 3.5e-13 79.0 42 85.7
Lalb_Chr06g0172281 Lupinus albus HOM05D003413 ORTHO05D004197 2.5e-11 72.8 44 86.4
GSVIVG01026163001 Vitis vinifera HOM05D000518 ORTHO05D439062 5.2e-09 65.1 35 91.4
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 2.2e-07 59.7 35 85.7
COL.COLO4_15071 Corchorus olitorius HOM05D003413 ORTHO05D029074 6.3e-07 58.2 33 87.9
COL.COLO4_24638 Corchorus olitorius HOM05D003413 ORTHO05D029074 6.3e-07 58.2 33 87.9
BcaC07g37608 Brassica carinata HOM05D003413 ORTHO05D004197 2.4e-06 56.2 75 46.7
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 2.4e-06 56.2 25 92.0
Hma1.2p1_0743F.1_g211500 Hydrangea macrophylla HOM05D000070 ORTHO05D000042 3.1e-06 55.8 28 92.9
Hma1.2p1_0055F.1_g031530 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 5.3e-06 55.1 68 51.5


User provided reference genes

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