Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 6.4e-88 327.4 167 100.0
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.5e-86 321.6 167 97.6
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 7.8e-86 320.5 167 97.6
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 1.6e-83 312.8 168 95.8
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.8e-82 309.3 168 95.2
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 5.4e-79 297.7 163 93.9
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.1e-60 236.9 163 79.8
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 1.7e-56 223.0 170 75.9
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 7.4e-52 207.6 168 71.4
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 9.6e-52 207.2 180 65.6
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 1.8e-50 203.0 178 65.7
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 4.0e-50 201.8 160 70.0
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 5.3e-50 201.4 174 66.7
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 9.0e-50 200.7 182 64.3
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 9.0e-50 200.7 182 64.3
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 2.6e-49 199.1 164 67.1
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 7.6e-49 197.6 178 66.3
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.7e-48 196.4 180 62.2
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 2.2e-48 196.1 180 63.3
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 3.8e-48 195.3 159 70.4
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 4.9e-48 194.9 171 64.3
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 8.4e-48 194.1 171 63.7
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 8.4e-48 194.1 174 64.9
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 8.4e-48 194.1 176 64.2
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 5.5e-47 191.4 171 63.2
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 7.1e-47 191.0 174 62.1
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 9.3e-47 190.7 165 65.5
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 1.6e-46 189.9 170 65.3
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 4.6e-46 188.3 160 67.5
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 6.0e-46 188.0 174 59.2
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 6.0e-46 188.0 163 66.3
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 6.0e-46 188.0 168 63.7
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 6.0e-46 188.0 172 64.0
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 1.8e-45 186.4 180 61.1
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 5.1e-45 184.9 174 64.4
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.1e-44 183.7 175 61.7
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 1.9e-44 183.0 181 59.1
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 4.3e-44 181.8 169 63.9
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 7.4e-44 181.0 162 65.4
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 1.3e-43 180.3 178 61.2
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 1.6e-43 179.9 163 63.8
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 2.8e-43 179.1 185 57.3
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 3.7e-43 178.7 172 62.2
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 4.8e-43 178.3 175 60.6
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 6.3e-43 177.9 175 59.4
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 6.3e-43 177.9 174 59.2
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 8.2e-43 177.6 163 63.2
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 1.1e-42 177.2 175 59.4
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 1.1e-42 177.2 175 60.0
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.4e-42 176.8 170 57.6
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.4e-42 176.8 163 63.2
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 1.8e-42 176.4 173 59.0
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 3.1e-42 175.6 150 67.3
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 9.0e-42 174.1 177 58.8
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 2.0e-41 172.9 174 59.2
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 4.5e-41 171.8 149 66.4
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 5.9e-41 171.4 179 57.5
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 1.0e-40 170.6 178 56.7
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 1.0e-40 170.6 177 57.6
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 1.0e-40 170.6 163 62.0
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.3e-40 170.2 166 59.0
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 1.7e-40 169.9 200 54.0
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 3.6e-38 162.2 169 60.9
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 3.6e-38 162.2 117 74.4
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 4.6e-38 161.8 118 75.4
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 1.8e-37 159.8 161 59.0
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 3.0e-37 159.1 142 64.1
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 3.9e-37 158.7 156 59.6
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 6.7e-37 157.9 112 73.2
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 1.1e-36 157.1 183 54.6
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 7.4e-36 154.5 173 53.8
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 7.4e-36 154.5 160 59.4
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 9.7e-36 154.1 109 70.6
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 2.2e-35 152.9 107 71.0
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 2.2e-35 152.9 109 74.3
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 4.8e-35 151.8 146 60.3
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 8.2e-35 151.0 176 51.1
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 8.2e-35 151.0 118 66.1
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 1.1e-34 150.6 155 54.2
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 1.8e-34 149.8 165 50.3
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 2.4e-34 149.4 146 62.3
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 5.3e-34 148.3 155 54.8
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 1.5e-33 146.7 122 62.3
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 2.6e-33 146.0 153 60.1
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 4.5e-33 145.2 156 55.8
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 7.7e-33 144.4 162 57.4
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 1.0e-32 144.1 155 57.4
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 2.2e-32 142.9 148 56.8
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 8.5e-32 141.0 141 60.3
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 1.9e-31 139.8 129 64.3
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 1.9e-31 139.8 140 60.7
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 3.2e-31 139.0 162 51.9
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 3.6e-30 135.6 160 50.0
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 8.2e-27 124.4 143 55.9
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.1e-26 124.0 107 60.7
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.4e-26 122.9 99 66.7
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 3.1e-26 122.5 177 48.0
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 4.1e-26 122.1 143 55.2
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 6.9e-26 121.3 162 48.8
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 4.5e-25 118.6 86 67.4
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 1.0e-24 117.5 86 66.3
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 5.0e-24 115.2 155 45.2
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 3.6e-22 109.0 82 67.1
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 8.2e-19 97.8 52 88.5
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 1.1e-18 97.4 106 52.8
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 9.1e-18 94.4 153 45.1
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 9.1e-18 94.4 122 48.4
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 2.6e-17 92.8 100 49.0
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 5.0e-16 88.6 93 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 2.3e-13 79.7 130 40.8
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 1.2e-12 77.4 114 36.0
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 2.8e-11 72.8 105 40.0
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 2.4e-10 69.7 110 44.5
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 2.4e-10 69.7 110 44.5
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 1.1e-07 60.8 92 37.0
C05p02720 Brassica napus HOM05D000117 ORTHO05D000070 1.1e-07 60.8 92 34.8
AT2G33310 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 3.2e-07 59.3 94 35.1
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 3.2e-07 59.3 94 35.1
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 3.2e-07 59.3 94 35.1
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 5.5e-07 58.5 92 34.8
BraA10t42566Z Brassica rapa HOM05D000117 ORTHO05D000070 5.5e-07 58.5 92 34.8
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 5.5e-07 58.5 92 37.0
SalBow4G2820 Salvia bowleyana HOM05D000117 ORTHO05D000070 5.5e-07 58.5 94 37.2
THA.LOC104804036 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 5.5e-07 58.5 92 33.7
MBI03_g18679_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 7.2e-07 58.2 92 34.8
SalBow4G2556 Salvia bowleyana HOM05D000117 ORTHO05D000070 7.2e-07 58.2 94 37.2
Sp4g15620 Schrenkiella parvula HOM05D000117 ORTHO05D000070 7.2e-07 58.2 94 34.0
A03p18680 Brassica napus HOM05D000117 ORTHO05D000070 9.4e-07 57.8 94 34.0
AL1G14220 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 1.2e-06 57.4 92 34.8
AL4G28960 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 1.2e-06 57.4 94 33.0
Thhalv10017143m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 1.2e-06 57.4 94 34.0
Oeu052080.1 Olea europaea HOM05D000117 ORTHO05D000070 1.2e-06 57.4 108 34.3
AT1G04550 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 1.6e-06 57.0 92 34.8
BcaC01g05848 Brassica carinata HOM05D000117 ORTHO05D000070 1.6e-06 57.0 94 34.0
C03p21820 Brassica napus HOM05D000117 ORTHO05D000070 1.6e-06 57.0 94 34.0
BolC3t14564H Brassica oleracea HOM05D000117 ORTHO05D000070 1.6e-06 57.0 94 34.0
Carub.0004s1493 Capsella rubella HOM05D000117 ORTHO05D000070 1.6e-06 57.0 94 34.0
Sp1g03380 Schrenkiella parvula HOM05D000117 ORTHO05D000070 1.6e-06 57.0 92 35.9
BcaNung05971 Brassica carinata HOM05D000117 ORTHO05D000070 2.1e-06 56.6 92 35.9
BcaNung06561 Brassica carinata HOM05D000117 ORTHO05D000070 2.1e-06 56.6 92 35.9
BraA03t11128Z Brassica rapa HOM05D000117 ORTHO05D000070 2.1e-06 56.6 94 34.0
Carub.0001s0376 Capsella rubella HOM05D000117 ORTHO05D000070 2.1e-06 56.6 92 34.8
Thhalv10008626m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 2.1e-06 56.6 92 34.8
Nitab4.5_0000355g0060 Nicotiana tabacum HOM05D000117 ORTHO05D000070 2.7e-06 56.2 92 35.9
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 2.7e-06 56.2 96 34.4
GSVIVG01000721001 Vitis vinifera HOM05D000117 ORTHO05D000070 2.7e-06 56.2 100 36.0
A01p09300 Brassica napus HOM05D000117 ORTHO05D000070 3.6e-06 55.8 106 33.0
BraA01t00874Z Brassica rapa HOM05D000117 ORTHO05D000070 3.6e-06 55.8 106 33.0
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 3.6e-06 55.8 99 32.3
THA.LOC104826098 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 3.6e-06 55.8 103 34.0
Ciclev10010410m.g Citrus clementina HOM05D000117 ORTHO05D000070 4.7e-06 55.5 94 34.0
PSO170G1783 Papaver somniferum HOM05D000117 ORTHO05D000070 4.7e-06 55.5 112 35.7
PSO782G5332 Papaver somniferum HOM05D000117 ORTHO05D000070 4.7e-06 55.5 111 36.0
BcaB02g10543 Brassica carinata HOM05D000117 ORTHO05D000070 6.1e-06 55.1 94 33.0
CARHR127310 Cardamine hirsuta HOM05D000117 ORTHO05D000070 6.1e-06 55.1 106 33.0
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 6.1e-06 55.1 95 33.7
Gohir.D09G228200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 6.1e-06 55.1 92 35.9
Psat6g062640 Pisum sativum HOM05D000117 ORTHO05D000070 6.1e-06 55.1 104 34.6
PGR031G2925 Punica granatum HOM05D000117 ORTHO05D000070 6.1e-06 55.1 98 35.7
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 6.1e-06 55.1 92 33.7
arahy.Tifrunner.gnm1.ann1.AIW4ZZ Arachis hypogaea HOM05D000117 ORTHO05D000070 8.0e-06 54.7 91 37.4
BcaC01g02847 Brassica carinata HOM05D000117 ORTHO05D000070 8.0e-06 54.7 99 32.3
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 8.0e-06 54.7 96 32.3
Eucgr.C02984 Eucalyptus grandis HOM05D000117 ORTHO05D000070 8.0e-06 54.7 106 30.2
Gohir.D10G160400 Gossypium hirsutum HOM05D000117 ORTHO05D000070 8.0e-06 54.7 92 32.6
PGR031G0139 Punica granatum HOM05D000117 ORTHO05D000070 8.0e-06 54.7 110 34.5
SMO137G0202 Selaginella moellendorffii HOM05D000117 ORTHO05D000070 8.0e-06 54.7 95 34.7
Solyc03g120390.3 Solanum lycopersicum HOM05D000117 ORTHO05D000070 8.0e-06 54.7 92 33.7
PGSC0003DMG402002635 Solanum tuberosum HOM05D000117 ORTHO05D000070 8.0e-06 54.7 92 33.7
THA.LOC104826053 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 8.0e-06 54.7 114 28.9


User provided reference genes

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