Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1681 Fragaria x ananassa HOM05D005615 ORTHO05D007558 1.1e-117 426.8 239 100.0
FAN17G1451 Fragaria x ananassa HOM05D005615 ORTHO05D007558 4.4e-114 414.8 242 90.9
FvH4_4g11460 Fragaria vesca HOM05D005615 ORTHO05D007558 5.3e-112 407.9 239 89.1
RcHm_v2.0_Chr4g0408131 Rosa chinensis HOM05D005615 ORTHO05D007558 1.1e-109 400.2 200 95.0
CANSAT78G0163 Cannabis sativa HOM05D005615 ORTHO05D007558 1.6e-103 379.8 200 87.5
MD04G1037300 Malus domestica HOM05D005615 ORTHO05D007558 5.9e-103 377.9 200 89.0
Actinidia34618 Actinidia chinensis HOM05D005615 ORTHO05D007558 3.2e-101 372.1 199 86.4
CiPaw.02G056100 Carya illinoinensis HOM05D005615 ORTHO05D007558 9.4e-101 370.5 200 85.0
Eucgr.A00054 Eucalyptus grandis HOM05D005615 ORTHO05D007558 2.1e-100 369.4 200 84.0
QL10p047743 Quercus lobata HOM05D005615 ORTHO05D007558 4.7e-100 368.2 200 85.0
Aqoxy2G04109 Aquilegia oxysepala HOM05D005615 ORTHO05D007558 8.0e-100 367.5 200 84.5
A05p03730 Brassica napus HOM05D005615 ORTHO05D007558 8.0e-100 367.5 200 85.0
Cfa015769 Carpinus fangiana HOM05D005615 ORTHO05D007558 8.0e-100 367.5 200 84.0
THA.LOC104803617 Tarenaya hassleriana HOM05D005615 ORTHO05D007558 1.0e-99 367.1 200 85.0
BcaB01g03390 Brassica carinata HOM05D005615 ORTHO05D007558 1.4e-99 366.7 200 84.5
Carub.0004s2582 Capsella rubella HOM05D005615 ORTHO05D007558 1.4e-99 366.7 200 85.0
Cc03_g13240 Coffea canephora HOM05D005615 ORTHO05D007558 1.4e-99 366.7 200 85.0
Nn7g37651 Nelumbo nucifera HOM05D005615 ORTHO05D007558 1.8e-99 366.3 200 84.0
A03p24210 Brassica napus HOM05D005615 ORTHO05D007558 2.3e-99 365.9 200 85.0
BraA03t11630Z Brassica rapa HOM05D005615 ORTHO05D007558 2.3e-99 365.9 200 85.0
Cpa.g.sc71.17 Carica papaya HOM05D005615 ORTHO05D007558 2.3e-99 365.9 200 84.0
AL4G42040 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 3.0e-99 365.5 200 84.0
Dinv44241 Davidia involucrata HOM05D005615 ORTHO05D007558 3.0e-99 365.5 200 84.0
PGR083G0205 Punica granatum HOM05D005615 ORTHO05D007558 3.0e-99 365.5 200 84.0
BcaC02g12407 Brassica carinata HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 84.5
BolC4t22075H Brassica oleracea HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 84.0
BraA05t19360Z Brassica rapa HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 84.5
CARHR138440 Cardamine hirsuta HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 85.0
Lj3g0021315 Lotus japonicus HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 83.0
Sp4g25460 Schrenkiella parvula HOM05D005615 ORTHO05D007558 4.0e-99 365.2 200 84.0
AT2G43360 Arabidopsis thaliana HOM05D005615 ORTHO05D007558 5.2e-99 364.8 200 84.0
Thecc.05G003200 Theobroma cacao HOM05D005615 ORTHO05D007558 5.2e-99 364.8 200 84.0
C04p04420 Brassica napus HOM05D005615 ORTHO05D007558 6.7e-99 364.4 200 84.0
Dinv22646 Davidia involucrata HOM05D005615 ORTHO05D007558 6.7e-99 364.4 200 84.0
Oeu018049.1 Olea europaea HOM05D005615 ORTHO05D007558 6.7e-99 364.4 200 84.5
Duzib093G1513 Durio zibethinus HOM05D005615 ORTHO05D007558 8.8e-99 364.0 200 84.0
TAR362G0587 Trochodendron aralioides HOM05D005615 ORTHO05D007558 8.8e-99 364.0 200 83.0
Atru.chr3.1563 Acer truncatum HOM05D005615 ORTHO05D007558 1.2e-98 363.6 200 83.5
Atru.chr3.1585 Acer truncatum HOM05D005615 ORTHO05D007558 1.2e-98 363.6 200 83.5
Sed0015751 Sechium edule HOM05D005615 ORTHO05D007558 1.2e-98 363.6 200 83.5
Eucgr.A00256 Eucalyptus grandis HOM05D005615 ORTHO05D007558 1.5e-98 363.2 201 83.1
HanXRQChr14g0434901 Helianthus annuus HOM05D005615 ORTHO05D007558 1.5e-98 363.2 200 84.5
Solyc06g073470.3 Solanum lycopersicum HOM05D005615 ORTHO05D007558 1.5e-98 363.2 200 84.0
Sopen06g029830 Solanum pennellii HOM05D005615 ORTHO05D007558 1.5e-98 363.2 200 84.0
CsaV3_6G003770 Cucumis sativus L. HOM05D005615 ORTHO05D007558 2.0e-98 362.8 200 83.5
Nitab4.5_0002368g0110 Nicotiana tabacum HOM05D005615 ORTHO05D007558 2.0e-98 362.8 200 83.5
Phvul.011G023300 Phaseolus vulgaris HOM05D005615 ORTHO05D007558 2.0e-98 362.8 200 81.0
Lsat_1_v5_gn_2_52041 Lactuca sativa HOM05D005615 ORTHO05D007558 2.6e-98 362.5 200 85.0
Lalb_Chr01g0001081 Lupinus albus HOM05D005615 ORTHO05D007558 3.3e-98 362.1 200 81.0
HPP92_002777 Vanilla planifolia HOM05D005615 ORTHO05D007558 3.3e-98 362.1 200 83.5
ClCG08G004320 Citrullus lanatus HOM05D005615 ORTHO05D007558 4.4e-98 361.7 200 83.0
MELO3C011628.2 Cucumis melo HOM05D005615 ORTHO05D007558 5.7e-98 361.3 200 82.5
Thhalv10001495m.g Eutrema salsugineum HOM05D005615 ORTHO05D007558 5.7e-98 361.3 200 83.0
Nitab4.5_0010690g0020 Nicotiana tabacum HOM05D005615 ORTHO05D007558 5.7e-98 361.3 200 83.0
Aa31LG1G25060 Aethionema arabicum HOM05D005615 ORTHO05D007558 7.5e-98 360.9 200 83.0
Glyma.12G020600 Glycine max HOM05D005615 ORTHO05D007558 7.5e-98 360.9 200 80.0
PGSC0003DMG400026904 Solanum tuberosum HOM05D005615 ORTHO05D007558 9.7e-98 360.5 200 83.5
arahy.Tifrunner.gnm1.ann1.2A1XYJ Arachis hypogaea HOM05D005615 ORTHO05D007558 1.3e-97 360.1 200 82.0
arahy.Tifrunner.gnm1.ann1.VQKS2I Arachis hypogaea HOM05D005615 ORTHO05D007558 1.3e-97 360.1 200 82.0
ECA238G2991 Erigeron canadensis HOM05D005615 ORTHO05D007558 1.3e-97 360.1 200 84.0
Potri.017G033300 Populus trichocarpa HOM05D005615 ORTHO05D007558 1.3e-97 360.1 200 82.0
Rhsim09G0030100 Rhododendron simsii HOM05D005615 ORTHO05D007558 1.7e-97 359.8 200 83.0
Haze_00733 Corylus avellana HOM05D005615 ORTHO05D007558 2.2e-97 359.4 206 81.6
VMungo1127G1033 Vigna mungo HOM05D005615 ORTHO05D007558 2.2e-97 359.4 200 80.5
Glyma.11G094200 Glycine max HOM05D005615 ORTHO05D007558 2.8e-97 359.0 200 79.5
Manes.04G040500 Manihot esculenta HOM05D005615 ORTHO05D007558 2.8e-97 359.0 200 82.5
Sc13g0007050 Simmondsia chinensis HOM05D005615 ORTHO05D007558 2.8e-97 359.0 199 79.9
PSO017G2630 Papaver somniferum HOM05D005615 ORTHO05D007558 3.7e-97 358.6 200 81.0
PSO675G8272 Papaver somniferum HOM05D005615 ORTHO05D007558 3.7e-97 358.6 200 81.5
Potri.007G126400 Populus trichocarpa HOM05D005615 ORTHO05D007558 3.7e-97 358.6 200 82.5
Lalb_Chr03g0024511 Lupinus albus HOM05D005615 ORTHO05D007558 8.2e-97 357.5 200 81.0
Ca_26061_v3 Cicer arietinum L. HOM05D005615 ORTHO05D007558 1.4e-96 356.7 200 80.0
Ciclev10020553m.g Citrus clementina HOM05D005615 ORTHO05D007558 1.4e-96 356.7 200 81.0
Medtr4g076870 Medicago truncatula HOM05D005615 ORTHO05D007558 1.8e-96 356.3 200 80.0
Gohir.A01G231200 Gossypium hirsutum HOM05D005615 ORTHO05D007558 2.4e-96 355.9 200 82.5
MSTRG.22029 Avicennia marina HOM05D005615 ORTHO05D007558 3.1e-96 355.5 200 82.0
Os08g0540100 Oryza sativa ssp. japonica HOM05D005615 ORTHO05D007558 3.1e-96 355.5 200 83.0
Sabra17G0020900 Salix brachista HOM05D005615 ORTHO05D007558 3.1e-96 355.5 200 80.0
Hund03143 Selenicereus undatus HOM05D005615 ORTHO05D007558 3.1e-96 355.5 199 81.9
GSVIVG01010734001 Vitis vinifera HOM05D005615 ORTHO05D007558 3.1e-96 355.5 200 81.0
EL10Ac3g05574 Beta vulgaris HOM05D005615 ORTHO05D007558 4.1e-96 355.1 199 80.9
Sabra07G0102500 Salix brachista HOM05D005615 ORTHO05D007558 4.1e-96 355.1 200 81.5
AUR62016250 Chenopodium quinoa HOM05D005615 ORTHO05D007558 9.1e-96 354.0 199 80.9
Gohir.D01G221300 Gossypium hirsutum HOM05D005615 ORTHO05D007558 1.2e-95 353.6 200 82.0
Gorai.002G267900 Gossypium raimondii HOM05D005615 ORTHO05D007558 1.2e-95 353.6 200 82.0
Psat7g172600 Pisum sativum HOM05D005615 ORTHO05D007558 1.2e-95 353.6 200 79.0
Migut.N03069 Erythranthe guttata HOM05D005615 ORTHO05D007558 1.6e-95 353.2 200 81.5
Zm00001eb037230 Zea mays HOM05D005615 ORTHO05D007558 2.0e-95 352.8 200 82.5
unitig_736.g22473 Utricularia gibba HOM05D005615 ORTHO05D007558 2.7e-95 352.4 200 80.5
CDE07G0588 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 3.5e-95 352.1 200 80.5
TPR.G13757 Trifolium pratense HOM05D005615 ORTHO05D007558 4.5e-95 351.7 199 78.9
TWI36G1239 Tripterygium wilfordii HOM05D005615 ORTHO05D007558 5.9e-95 351.3 200 80.5
ATR0743G064 Amborella trichopoda HOM05D005615 ORTHO05D007558 1.0e-94 350.5 200 79.5
SEGI_32939 Sequoiadendron giganteum HOM05D005615 ORTHO05D007558 1.3e-94 350.1 200 79.5
AUR62034151 Chenopodium quinoa HOM05D005615 ORTHO05D007558 1.7e-94 349.7 199 80.9
DCAR_029917 Daucus carota HOM05D005615 ORTHO05D007558 2.9e-94 349.0 199 79.4
SGA_v2.0_scaffold283G46961 Striga asiatica HOM05D005615 ORTHO05D007558 3.8e-94 348.6 199 80.9
Pp3c1_16250 Physcomitrium patens HOM05D005615 ORTHO05D007558 8.8e-91 337.4 200 77.5
Mapoly0041s0099 Marchantia polymorpha HOM05D005615 ORTHO05D007558 2.0e-90 336.3 197 78.7
SMO358G0150 Selaginella moellendorffii HOM05D005615 ORTHO05D007558 5.7e-90 334.7 200 76.0
Pp3c11_17440 Physcomitrium patens HOM05D005615 ORTHO05D007558 2.2e-89 332.8 200 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 3.5e-87 325.5 197 75.1
MBI11_g35028_MAGBIO Magnolia biondii HOM05D005615 ORTHO05D007558 4.0e-83 312.0 200 74.0
AagrBONN_evm.TU.Sc2ySwM_344.4725 Anthoceros agrestis HOM05D005615 ORTHO05D007558 2.2e-81 306.2 200 68.5
Ciclev10024495m.g Citrus clementina HOM05D005615 ORTHO05D007558 4.9e-81 305.1 200 71.0
SGA_v2.0_scaffold12G06187 Striga asiatica HOM05D005615 ORTHO05D007558 5.4e-80 301.6 218 67.4
Lj6A60G37 Lonicera japonica HOM05D005615 ORTHO05D007558 6.6e-78 294.7 164 83.5
BcaC01g05236 Brassica carinata HOM05D005615 ORTHO05D007558 1.8e-75 286.6 204 68.6
BolC3t15243H Brassica oleracea HOM05D005615 ORTHO05D007558 4.0e-75 285.4 203 68.5
Ciclev10024062m.g Citrus clementina HOM05D005615 ORTHO05D007558 3.9e-70 268.9 200 64.0
vmacro00603 Vaccinium macrocarpon HOM05D005615 ORTHO05D007558 5.0e-70 268.5 230 60.4
MCO13G117 Micromonas commoda HOM05D005615 ORTHO05D007558 2.0e-63 246.5 191 62.8
Cre06.g261150 Chlamydomonas reinhardtii HOM05D005615 ORTHO05D007558 3.6e-60 235.7 192 59.4
HPP92_028241 Vanilla planifolia HOM05D005615 ORTHO05D001525 1.8e-59 233.4 200 58.0
Prupe.1G186700 Prunus persica HOM05D005615 ORTHO05D007558 1.0e-54 217.6 116 89.7
CAN.G65.188 Capsicum annuum HOM05D005615 ORTHO05D007558 8.9e-51 204.5 116 81.9
CBR_g54828 Chara braunii HOM05D005615 ORTHO05D007558 3.4e-50 202.6 129 69.8
Haze_27367 Corylus avellana HOM05D005615 ORTHO05D007558 4.1e-48 195.7 187 50.3
Actinidia27060 Actinidia chinensis HOM05D005615 ORTHO05D007558 2.4e-43 179.9 97 86.6
COL.COLO4_14419 Corchorus olitorius HOM05D005615 ORTHO05D007558 1.8e-27 127.1 67 85.1
Peaxi162Scf00375g00079 Petunia axillaris HOM05D005615 ORTHO05D007558 5.3e-27 125.6 67 83.6
AL3G36550 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 2.0e-26 123.6 67 82.1
Zm00001eb198320 Zea mays HOM05D005615 ORTHO05D007558 7.6e-26 121.7 67 79.1
Cpa.g.c45785 Carica papaya HOM05D005615 ORTHO05D007558 7.1e-24 115.2 60 88.3
AL4G42060 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 5.3e-19 99.0 57 77.2
CBR_g54834 Chara braunii HOM05D005615 ORTHO05D007558 2.2e-17 93.6 57 75.4


User provided reference genes

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