Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.2e-107 391.3 197 100.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.9e-99 365.9 194 95.9
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.6e-98 362.8 194 95.4
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.7e-95 352.8 194 90.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.3e-75 285.4 196 74.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 5.2e-73 278.1 195 71.3
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.8e-72 274.6 201 70.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 9.9e-72 273.9 195 70.8
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-70 270.4 197 69.0
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-70 270.4 198 69.2
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-70 270.0 194 70.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.2e-70 268.5 198 69.7
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.6e-69 266.5 198 69.7
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.3e-68 263.5 198 67.7
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.3e-68 263.5 197 67.0
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.9e-68 261.9 197 67.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 8.7e-68 260.8 197 67.0
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 3.3e-67 258.8 193 67.9
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.3e-67 257.7 195 67.2
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.3e-67 257.7 207 65.7
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.6e-66 256.5 193 66.3
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.8e-66 255.8 199 66.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.8e-66 255.8 199 63.8
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.6e-66 255.4 199 64.8
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 4.8e-66 255.0 198 68.7
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 8.1e-66 254.2 198 67.7
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 8.1e-66 254.2 207 63.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 8.1e-66 254.2 191 66.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.1e-65 253.8 197 68.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.1e-65 253.8 197 69.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.4e-65 253.4 198 64.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.4e-65 253.4 191 65.4
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.4e-65 253.4 199 66.3
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.4e-65 252.7 200 65.0
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 5.3e-65 251.5 196 68.4
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.3e-65 251.5 198 65.7
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 9.0e-65 250.8 191 66.0
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 9.0e-65 250.8 213 61.5
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.2e-64 250.4 198 67.7
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.0e-64 249.6 195 64.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.4e-64 248.8 204 62.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.4e-64 248.4 197 65.5
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.8e-64 248.1 197 66.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 9.9e-64 247.3 204 62.3
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.7e-63 246.5 197 64.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.7e-63 246.5 197 64.5
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.7e-63 246.5 197 64.5
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.2e-63 246.1 198 63.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.2e-63 246.1 195 63.1
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.2e-63 246.1 197 64.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.9e-63 245.7 190 65.8
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 4.9e-63 245.0 200 62.5
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.4e-63 244.6 196 62.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.4e-63 244.6 204 61.8
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 8.4e-63 244.2 194 67.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.1e-62 243.8 200 61.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.4e-62 243.4 189 65.6
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 2.4e-62 242.7 211 60.2
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.2e-62 242.3 195 63.6
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 5.4e-62 241.5 199 61.3
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 5.4e-62 241.5 198 63.6
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.1e-62 241.1 200 60.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-61 240.4 198 60.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.6e-61 238.4 211 60.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 6.0e-61 238.0 208 61.1
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.7e-60 236.5 190 61.6
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.5e-59 233.4 198 63.6
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.9e-59 233.0 199 61.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 2.5e-59 232.6 183 63.9
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 3.3e-59 232.3 199 64.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 4.3e-59 231.9 197 60.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.3e-59 231.9 199 60.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 5.6e-59 231.5 206 60.7
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 5.6e-59 231.5 206 61.2
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 7.3e-59 231.1 191 64.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 7.3e-59 231.1 198 61.6
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.3e-58 230.3 198 61.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.8e-58 228.4 198 61.1
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.8e-57 226.5 199 59.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 3.1e-57 225.7 192 59.9
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.3e-57 224.9 197 58.9
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 6.9e-57 224.6 190 61.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.0e-56 223.0 198 58.1
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.6e-56 222.6 179 62.6
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.6e-56 221.1 156 71.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 7.6e-56 221.1 212 57.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 4.9e-55 218.4 197 57.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.4e-54 216.9 216 55.1
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.4e-54 216.9 199 55.8
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 5.4e-54 214.9 197 56.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 5.4e-54 214.9 192 57.3
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 9.3e-54 214.2 197 56.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 9.3e-54 214.2 198 57.1
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-53 213.8 197 56.9
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-53 213.8 197 56.9
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.1e-53 213.0 198 59.6
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.1e-53 213.0 188 58.0
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 4.6e-53 211.8 195 57.4
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 6.0e-53 211.5 190 56.8
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 6.0e-53 211.5 195 60.5
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.0e-52 210.7 201 55.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.0e-52 210.7 199 59.3
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.3e-52 209.5 196 57.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.9e-52 208.8 200 55.5
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.1e-51 207.2 185 59.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-51 206.8 155 65.8
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.9e-51 206.5 194 56.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 3.3e-51 205.7 195 57.4
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.6e-50 203.4 198 55.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 3.7e-50 202.2 195 56.9
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.4e-49 199.5 194 55.2
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 7.6e-48 194.5 194 56.7
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-47 193.4 261 44.8
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 4.2e-46 188.7 299 41.1
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.6e-45 186.8 193 55.4
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 7.9e-45 184.5 101 85.1
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.8e-44 183.3 195 52.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.0e-44 182.6 196 52.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.1e-43 180.6 191 52.9
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.5e-43 180.3 184 54.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 5.7e-43 178.3 158 57.6
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-40 170.2 194 49.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.6e-40 169.5 173 54.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.6e-40 169.5 173 54.9
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 4.5e-40 168.7 176 47.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.0e-39 167.5 163 55.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.1e-37 159.8 184 48.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 6.1e-37 158.3 181 49.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 6.3e-34 148.3 127 55.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.1e-29 131.7 181 46.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.7e-28 128.3 100 67.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 3.3e-27 125.9 132 45.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 9.7e-27 124.4 96 67.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.3e-26 124.0 114 58.8
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.1e-25 120.9 129 49.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.2e-24 117.5 127 45.7
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.7e-23 113.6 98 62.2
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.2e-23 113.2 150 43.3
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.5e-23 111.3 105 49.5
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.5e-22 108.6 106 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.6e-21 107.1 129 44.2
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 3.6e-21 105.9 144 49.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.4e-20 104.0 116 49.1
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-20 102.8 116 49.1
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.4e-19 98.2 101 57.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.2e-18 96.7 140 41.4
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.1e-17 92.8 136 36.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.5e-16 89.4 100 54.0
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.2e-14 82.4 54 72.2
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.2e-13 80.9 121 36.4
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.8e-12 77.0 118 41.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 7.4e-11 71.6 64 59.4
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 3.7e-10 69.3 64 56.2
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.1e-09 67.8 63 55.6
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 3.1e-09 66.2 55 63.6
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 6.5e-07 58.5 45 64.4


User provided reference genes

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