Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 3.0e-162 575.1 287 100.0
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 1.2e-158 563.1 285 98.2
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 3.5e-158 561.6 287 97.9
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 8.5e-157 557.0 285 97.5
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 3.6e-147 525.0 285 90.9
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 4.0e-130 468.4 287 82.2
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 7.5e-129 464.2 285 81.1
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 7.8e-126 454.1 285 78.9
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 3.6e-115 418.7 293 72.0
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 2.0e-113 412.9 293 70.6
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 2.7e-110 402.5 289 69.2
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 7.8e-110 401.0 287 70.0
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 1.3e-109 400.2 293 68.9
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 5.1e-109 398.3 293 68.6
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.1e-108 397.1 294 67.7
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 2.1e-107 392.9 293 68.6
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 2.1e-107 392.9 295 67.8
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.8e-107 392.5 293 67.9
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.8e-107 392.5 293 67.9
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 1.1e-106 390.6 293 67.6
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.1e-106 390.6 293 66.9
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 4.0e-106 388.7 291 67.4
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 8.9e-106 387.5 293 66.2
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 1.5e-105 386.7 292 64.7
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 4.9e-104 381.7 308 65.3
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 6.4e-104 381.3 286 67.5
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 8.4e-104 380.9 293 65.9
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 1.1e-103 380.6 293 67.2
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 1.4e-103 380.2 293 66.2
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 1.4e-103 380.2 293 67.2
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.9e-103 379.8 290 66.2
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 1.9e-103 379.8 315 63.5
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 2.4e-103 379.4 293 66.6
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 3.2e-103 379.0 283 67.8
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 3.2e-103 379.0 286 66.4
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 5.4e-103 378.3 292 66.4
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 7.1e-103 377.9 287 64.8
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 9.2e-103 377.5 293 64.8
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 1.6e-102 376.7 278 69.4
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 7.8e-102 374.4 287 64.1
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.0e-101 374.0 287 65.9
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.0e-101 374.0 288 64.6
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 1.3e-101 373.6 287 64.1
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 2.3e-101 372.9 291 64.6
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 2.3e-101 372.9 296 66.2
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 3.9e-101 372.1 286 66.1
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 3.9e-101 372.1 292 64.7
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 3.9e-101 372.1 286 66.8
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 8.7e-101 370.9 293 64.8
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 8.7e-101 370.9 293 66.6
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 2.5e-100 369.4 290 65.2
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 2.5e-100 369.4 293 62.1
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 3.6e-99 365.5 286 65.4
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 1.1e-98 364.0 291 65.3
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 2.4e-98 362.8 293 61.8
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.4e-98 362.8 262 71.4
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 3.1e-98 362.5 286 65.7
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 9.0e-98 360.9 286 65.4
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 3.4e-97 359.0 288 63.2
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 5.8e-97 358.2 281 65.1
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 7.6e-97 357.8 286 64.7
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 3.8e-96 355.5 287 62.7
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.4e-96 354.8 281 64.8
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 1.1e-95 354.0 281 64.8
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 2.4e-95 352.8 268 67.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 7.1e-95 351.3 281 64.1
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 2.1e-94 349.7 281 64.8
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 2.7e-94 349.4 291 62.5
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 2.3e-93 346.3 305 60.3
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 5.1e-93 345.1 293 62.5
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 6.6e-93 344.7 269 67.3
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 8.7e-93 344.4 293 62.5
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 3.3e-92 342.4 283 65.0
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 7.3e-92 341.3 276 63.4
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 4.5e-89 332.0 325 55.7
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.9e-88 329.3 285 58.2
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 6.4e-88 328.2 274 61.3
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 8.4e-88 327.8 274 60.9
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 8.4e-88 327.8 226 72.1
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 9.3e-87 324.3 299 58.5
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 1.9e-84 316.6 238 69.7
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 3.3e-84 315.8 364 51.6
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 7.4e-84 314.7 220 70.5
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 3.7e-83 312.4 282 58.2
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 1.3e-80 303.9 316 54.7
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 1.7e-80 303.5 284 54.2
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 1.3e-77 293.9 289 56.1
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 6.7e-77 291.6 399 46.1
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 2.5e-76 289.7 284 57.0
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 2.5e-76 289.7 210 70.0
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 4.3e-76 288.9 283 55.8
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 8.2e-75 284.6 285 56.5
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 1.8e-69 266.9 354 46.0
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 2.8e-67 259.6 311 48.2
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 2.8e-67 259.6 218 61.0
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 8.2e-67 258.1 446 39.2
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 5.3e-66 255.4 280 50.4
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 5.5e-63 245.4 213 61.0
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 8.8e-61 238.0 248 54.8
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 4.3e-60 235.7 270 46.3
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 1.4e-58 230.7 163 70.6
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 3.6e-54 216.1 162 65.4
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 1.8e-53 213.8 263 47.5
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 5.7e-52 208.8 280 44.3
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 8.0e-46 188.3 158 60.1
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 5.3e-42 175.6 227 47.1
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 1.7e-40 170.6 180 50.0
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.1e-39 167.9 214 49.1
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 8.0e-38 161.8 166 54.8
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 8.8e-37 158.3 289 35.6
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 8.3e-35 151.8 124 65.3
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 4.5e-33 146.0 118 66.9
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 2.9e-24 116.7 73 74.0
QL11p009732 Quercus lobata HOM05D005327 ORTHO05D006655 8.6e-24 115.2 73 75.3
Sopen09g026020 Solanum pennellii HOM05D005327 ORTHO05D006655 1.5e-23 114.4 76 73.7
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 9.5e-23 111.7 73 69.9
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 5.2e-21 105.9 76 68.4
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 1.0e-16 91.7 64 67.2
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 1.5e-12 77.8 73 56.2
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 2.2e-11 73.9 45 66.7
vmacro20790 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 3.2e-10 70.1 45 77.8
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 1.0e-08 65.1 45 64.4
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 3.0e-08 63.5 59 57.6
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 1.5e-07 61.2 262 26.7
CSS0006230 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 2.5e-07 60.5 33 84.8
Solyc09g031890.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.8e-06 57.0 58 55.2
SHI03087 Sapria himalayana HOM05D005327 ORTHO05D006655 4.7e-06 56.2 58 51.7
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 6.2e-06 55.8 191 25.1
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 8.0e-06 55.5 109 29.4
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 8.0e-06 55.5 109 28.4


User provided reference genes

Program Settings