Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.4e-211 738.0 358 100.0
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.0e-191 673.3 436 78.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 5.6e-190 667.5 436 78.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.1e-188 661.8 436 78.0
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.0e-159 567.0 446 66.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 7.7e-131 471.1 445 55.1
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.4e-129 466.8 441 55.3
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.1e-128 463.0 445 56.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 8.2e-125 451.1 443 53.7
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-123 447.2 445 52.6
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.0e-123 446.4 436 52.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.5e-123 445.3 447 52.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.0e-122 444.1 440 53.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.9e-122 442.6 442 51.6
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.1e-121 440.7 473 50.5
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.5e-121 439.5 442 52.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.2e-121 438.7 445 51.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 7.2e-121 438.0 447 52.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 7.2e-121 438.0 445 51.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.2e-120 437.2 445 51.0
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.1e-120 436.4 445 50.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.1e-120 436.4 445 52.4
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 4.7e-120 435.3 444 53.2
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 8.0e-120 434.5 445 51.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.0e-118 429.9 447 52.1
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 7.4e-118 427.9 445 49.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 7.4e-118 427.9 445 51.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 9.7e-118 427.6 445 50.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 9.7e-118 427.6 457 48.8
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.3e-117 427.2 437 51.9
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.3e-117 427.2 445 49.9
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.3e-117 427.2 445 50.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.3e-117 427.2 445 50.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.2e-117 426.4 445 51.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.1e-116 424.1 438 51.6
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 1.1e-116 424.1 445 49.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.4e-116 423.7 445 51.2
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.4e-116 423.7 445 51.0
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.1e-116 422.5 445 49.4
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 5.3e-116 421.8 443 50.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 7.0e-116 421.4 435 52.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.6e-115 420.2 434 51.6
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.6e-115 419.5 445 50.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.5e-115 419.1 425 52.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.5e-115 419.1 425 52.0
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.5e-115 418.7 443 49.2
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-115 418.7 440 50.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.5e-115 418.7 437 50.8
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.9e-115 418.3 443 49.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.0e-114 417.5 449 51.0
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 2.2e-114 416.4 490 47.8
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.9e-114 416.0 445 49.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.8e-114 415.6 434 50.7
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 5.0e-114 415.2 434 50.9
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 5.0e-114 415.2 434 50.9
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 5.0e-114 415.2 448 48.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 8.5e-114 414.5 445 48.8
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.9e-113 413.3 437 49.4
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.2e-113 412.5 443 48.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 9.4e-113 411.0 452 49.6
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 9.4e-113 411.0 438 49.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 9.4e-113 411.0 437 49.2
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.6e-112 410.2 436 49.5
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.1e-112 409.8 436 49.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.6e-112 409.1 434 50.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.7e-112 408.7 447 50.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.4e-111 407.1 446 49.8
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 3.0e-111 406.0 444 50.5
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 5.2e-111 405.2 444 49.5
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.6e-110 402.9 447 48.1
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.2e-109 399.8 445 48.3
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.2e-109 399.8 419 50.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.2e-109 399.8 447 47.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.7e-109 399.1 445 49.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 3.7e-109 399.1 437 48.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.8e-109 398.7 445 48.8
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.3e-108 395.2 384 55.5
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.9e-106 389.4 445 46.1
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.5e-105 386.3 421 48.5
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.8e-103 378.3 432 45.8
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.4e-102 375.6 432 45.6
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 4.4e-102 375.6 444 48.0
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.7e-101 372.5 429 45.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.1e-100 370.9 364 54.4
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.1e-100 369.4 444 47.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 9.1e-100 367.9 432 44.9
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.2e-97 358.2 374 51.6
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.2e-96 357.5 395 50.6
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 6.1e-96 355.1 401 48.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.8e-95 353.6 431 43.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.2e-94 350.9 438 45.4
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-94 350.9 438 45.4
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.2e-94 350.9 438 45.4
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.5e-94 350.5 366 51.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.7e-93 347.1 445 46.5
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 6.3e-93 345.1 363 51.8
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.1e-92 344.4 443 43.8
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.1e-92 342.8 440 41.6
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.4e-92 342.0 440 46.8
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 5.9e-91 338.6 445 42.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 3.3e-89 332.8 440 41.8
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 4.7e-88 328.9 383 45.7
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.0e-87 326.2 407 45.0
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.7e-85 319.3 378 46.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.6e-83 313.9 359 48.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.0e-82 311.2 439 41.7
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.0e-82 311.2 382 44.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.5e-81 306.6 464 40.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 8.3e-77 291.6 352 44.6
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.4e-76 290.8 368 46.5
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.2e-76 289.7 459 39.7
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 7.8e-75 285.0 324 48.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.2e-69 266.9 410 40.0
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 8.3e-69 265.0 383 41.8
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.4e-68 264.2 329 47.4
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-65 254.6 229 54.1
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.1e-64 250.4 439 38.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.8e-63 247.3 440 35.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.2e-61 240.4 227 54.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 4.2e-60 236.1 411 35.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.5e-59 233.0 425 36.2
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 5.6e-57 225.7 227 52.9
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 9.9e-54 214.9 439 34.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.1e-52 211.5 443 34.5
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.1e-51 207.2 151 64.2
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.3e-50 203.8 136 69.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 9.6e-49 198.4 135 70.4
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.0e-42 178.3 300 38.3
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-39 167.5 112 70.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 6.9e-39 165.6 474 27.4
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.5e-33 147.9 136 53.7
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 3.1e-31 140.2 227 40.5
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.0e-30 137.5 513 25.9
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.8e-30 136.0 146 50.0
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-27 127.9 102 56.9
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 6.5e-21 105.9 100 50.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 3.2e-20 103.6 72 63.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 8.2e-16 89.0 136 39.0
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-10 71.2 71 49.3
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 5.7e-09 66.2 116 37.1
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.3e-08 65.1 137 32.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.2e-08 64.3 119 32.8
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 2.2e-08 64.3 92 41.3
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 6.3e-08 62.8 146 31.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.4e-07 60.8 143 32.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.4e-07 60.8 143 32.9
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.4e-07 60.8 146 31.5
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.1e-07 60.5 146 32.9
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 3.1e-07 60.5 117 33.3
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 4.1e-07 60.1 116 31.9
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 4.1e-07 60.1 143 31.5
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 5.3e-07 59.7 116 33.6
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 9.1e-07 58.9 116 32.8
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 9.1e-07 58.9 33 84.8
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 9.1e-07 58.9 143 32.9
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 9.1e-07 58.9 116 31.9
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 9.1e-07 58.9 116 32.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.2e-06 58.5 119 31.1
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.2e-06 58.5 118 32.2
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.2e-06 58.5 116 32.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.5e-06 58.2 143 32.9
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.5e-06 58.2 143 32.9
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.5e-06 58.2 143 32.9
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.5e-06 58.2 116 32.8
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.0e-06 57.8 143 31.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 2.6e-06 57.4 119 31.1
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 2.6e-06 57.4 143 31.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.5e-06 57.0 116 31.0
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 3.5e-06 57.0 105 32.4
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.5e-06 57.0 143 31.5
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.5e-06 57.0 117 30.8
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 4.5e-06 56.6 118 31.4
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.5e-06 56.6 116 33.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 5.9e-06 56.2 118 30.5
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 7.7e-06 55.8 129 31.0


User provided reference genes

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