Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-107 391.7 200 100.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-107 391.7 200 100.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-106 389.8 200 99.5
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 6.9e-105 384.0 209 95.7
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-104 383.3 200 97.5
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 8.4e-103 377.1 209 93.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.1e-99 366.7 198 92.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 9.6e-99 363.6 205 89.3
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 9.6e-99 363.6 205 89.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.8e-98 362.1 207 88.9
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 6.2e-98 360.9 207 88.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.2e-98 360.5 207 88.9
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.4e-97 359.8 207 87.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.8e-97 359.4 207 89.4
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.8e-97 359.4 207 87.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 4.0e-97 358.2 207 87.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.0e-97 358.2 207 88.9
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.3e-97 357.8 207 87.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 6.9e-97 357.5 205 88.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.9e-97 357.5 206 87.4
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.9e-97 357.5 207 87.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.9e-97 357.5 207 87.4
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 9.0e-97 357.1 207 87.0
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 9.0e-97 357.1 207 87.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.2e-96 356.7 205 87.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.5e-96 356.3 207 87.4
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.5e-96 356.3 207 87.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.5e-96 356.3 207 87.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.0e-96 355.9 207 86.5
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.0e-96 355.9 205 88.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.0e-96 355.9 207 87.4
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.6e-96 355.5 207 87.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.6e-96 355.5 207 87.0
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.6e-96 355.5 207 87.0
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.4e-96 355.1 207 86.5
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.4e-96 355.1 207 86.5
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.5e-96 354.8 207 86.5
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 5.8e-96 354.4 207 86.0
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.8e-96 354.4 207 86.0
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 7.6e-96 354.0 209 86.6
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.0e-95 353.6 205 87.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.0e-95 353.6 205 87.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.7e-95 352.8 207 86.5
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.7e-95 352.8 207 85.5
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.7e-95 352.8 207 85.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-95 352.8 207 86.5
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.2e-95 352.4 207 86.0
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.2e-95 352.4 207 86.0
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.8e-95 351.7 207 85.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.9e-95 351.3 212 85.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.9e-95 351.3 216 84.3
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.5e-95 350.9 207 86.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 6.5e-95 350.9 209 84.7
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.5e-95 350.9 207 86.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.5e-95 350.9 207 86.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.4e-95 350.5 207 85.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-94 350.1 207 85.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.4e-94 349.7 204 86.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.9e-94 349.4 207 85.5
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.5e-94 349.0 208 86.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.5e-94 349.0 208 86.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.5e-94 349.0 208 86.1
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.5e-94 349.0 205 85.4
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.5e-94 349.0 207 86.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 3.2e-94 348.6 207 85.5
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 4.2e-94 348.2 205 84.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.2e-94 348.2 205 84.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 7.1e-94 347.4 207 85.5
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 7.1e-94 347.4 207 86.0
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 9.3e-94 347.1 207 84.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-93 345.9 208 85.1
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.5e-93 345.1 206 84.5
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 4.6e-93 344.7 207 84.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 6.0e-93 344.4 207 83.6
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 7.9e-93 344.0 208 84.6
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 7.9e-93 344.0 208 84.6
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 7.9e-93 344.0 206 83.5
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.8e-92 342.8 208 84.1
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.3e-92 342.4 202 85.6
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.3e-92 342.4 208 84.1
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.3e-92 342.4 207 83.6
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.3e-92 342.4 208 84.1
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.3e-92 342.4 208 84.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.0e-92 342.0 208 84.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 3.0e-92 342.0 208 84.1
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 5.1e-92 341.3 205 82.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.7e-92 340.9 207 83.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.1e-91 340.1 208 82.7
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.9e-91 339.3 207 82.6
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.9e-91 339.3 208 83.2
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 3.3e-91 338.6 206 83.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 7.4e-91 337.4 206 84.0
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.3e-90 336.7 204 83.8
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.6e-90 336.3 207 82.1
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.1e-90 335.9 207 82.1
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 6.3e-90 334.3 204 83.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 6.3e-90 334.3 206 84.0
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 4.1e-89 331.6 206 84.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.6e-88 328.9 195 86.7
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 3.4e-88 328.6 207 78.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 3.4e-88 328.6 207 78.3
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.7e-87 326.2 208 80.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.3e-84 315.8 178 89.3
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 4.3e-83 311.6 179 86.6
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.3e-82 310.1 207 79.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 3.7e-82 308.5 178 86.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.6e-80 302.4 178 85.4
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 2.6e-80 302.4 189 81.5
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 5.9e-80 301.2 177 85.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.0e-79 300.4 205 77.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 3.2e-78 295.4 179 81.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 4.2e-78 295.0 209 70.8
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.6e-77 292.0 207 76.3
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.1e-76 288.1 209 75.1
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.5e-72 275.0 161 83.9
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.6e-69 266.5 156 86.5
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 4.7e-69 265.0 204 68.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 3.0e-68 262.3 156 84.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 7.4e-67 257.7 206 68.0
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.2e-62 241.9 231 59.3
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.7e-61 239.2 196 59.7
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 2.7e-61 239.2 202 58.4
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 5.2e-60 235.0 200 56.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.5e-59 231.1 205 62.0
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.1e-57 225.7 162 73.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 7.0e-57 224.6 204 55.4
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.2e-56 223.8 132 87.1
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.0e-52 210.7 207 50.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.5e-51 204.5 120 85.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-49 199.5 205 50.2
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 5.0e-47 191.8 202 51.5
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.2e-45 187.2 167 63.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.8e-45 186.0 204 45.6
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.2e-44 181.8 151 66.2
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.2e-42 176.4 196 44.9
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 7.8e-40 167.9 208 50.0
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.8e-39 165.6 226 41.6
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 5.2e-36 155.2 102 75.5
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.5e-35 153.7 160 58.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 7.5e-35 151.4 196 48.5
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.6e-32 142.1 183 40.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 6.6e-31 138.3 207 44.4
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.2e-29 131.7 73 87.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-27 127.1 81 77.8
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 6.0e-24 115.2 96 68.8
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 8.6e-23 111.3 60 90.0
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 8.6e-23 111.3 99 62.6
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-20 104.0 135 50.4
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 4.0e-20 102.4 69 75.4
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 8.9e-20 101.3 92 62.0
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.1e-17 91.7 60 71.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.5e-14 84.0 82 57.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 3.4e-11 72.8 62 67.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 3.8e-10 69.3 61 59.0
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.4e-09 67.4 39 79.5
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.3e-07 60.8 58 65.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.3e-07 60.1 173 23.7
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.7e-07 58.2 38 68.4


User provided reference genes

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