Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1646.3 862 100.0
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1558.9 863 96.1
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 0.0e+00 1555.8 863 95.7
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1550.4 863 95.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1549.6 872 95.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1445.6 866 90.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1438.7 863 89.9
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1411.7 863 88.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1208.4 859 75.7
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 0.0e+00 1205.3 873 76.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1129.4 776 78.0
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1102.8 867 68.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1078.5 864 69.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.5e-305 1052.7 955 63.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.1e-300 1036.6 892 65.0
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 4.5e-294 1014.6 864 64.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.7e-293 1012.7 882 64.2
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.1e-287 993.4 873 62.5
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-287 993.4 870 61.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.4e-286 988.4 850 64.0
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 7.7e-286 987.3 870 61.6
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 9.4e-284 980.3 845 64.4
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.7e-283 978.8 885 62.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.6e-283 978.4 870 61.4
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-282 976.5 862 63.0
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 3.9e-282 974.9 846 63.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 3.1e-279 965.3 885 62.5
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.0e-278 962.6 903 61.2
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.6e-278 962.2 854 64.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 3.2e-276 955.3 884 61.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 9.7e-273 943.7 862 62.1
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.6e-270 935.6 883 59.5
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.9e-270 934.5 856 60.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 5.0e-269 931.4 875 61.0
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.9e-268 929.5 847 62.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.7e-267 924.9 847 62.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 8.8e-266 920.6 847 61.4
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.5e-265 919.8 869 59.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 2.0e-265 919.5 924 59.5
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 4.4e-265 918.3 874 59.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.2e-264 916.0 852 61.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.1e-263 911.8 879 58.6
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 5.9e-262 907.9 886 58.8
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 7.7e-262 907.5 859 59.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.5e-260 903.3 879 57.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.9e-260 902.9 755 66.6
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 9.4e-260 900.6 885 58.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-259 899.8 866 58.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.7e-259 898.3 855 58.4
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.0e-258 897.1 850 59.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.0e-258 897.1 886 58.7
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 8.8e-258 894.0 857 59.6
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 8.8e-258 894.0 883 58.7
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.2e-257 893.6 850 58.5
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 4.4e-257 891.7 938 56.5
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 4.1e-255 885.2 769 64.2
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 7.7e-254 880.9 877 58.0
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.3e-253 880.2 886 57.0
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.3e-253 880.2 880 58.3
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 2.2e-253 879.4 852 59.0
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.2e-252 875.5 859 58.2
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 5.5e-252 874.8 733 66.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 9.5e-252 874.0 886 56.7
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.6e-251 873.2 880 56.9
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 2.7e-251 872.5 876 56.7
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 2.3e-250 869.4 881 57.5
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.4e-249 865.5 887 55.9
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.7e-249 864.8 848 57.3
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.7e-248 862.1 827 58.6
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 6.3e-248 861.3 878 56.7
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.3e-245 852.8 876 56.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.3e-245 852.8 847 56.9
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.1e-243 846.3 887 55.6
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.0e-242 842.4 828 58.0
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.6e-241 839.3 932 54.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 2.6e-241 839.3 871 56.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.4e-239 832.8 875 55.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 9.2e-239 830.9 779 59.4
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.6e-238 828.6 851 56.5
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.3e-237 826.2 842 58.0
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.1e-235 819.7 846 57.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-234 817.4 877 56.2
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 6.8e-234 814.7 839 57.0
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-233 813.1 881 55.1
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-233 813.1 839 56.9
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-232 810.4 880 54.5
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-232 810.1 838 56.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.1e-231 807.4 881 54.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.4e-231 806.2 857 54.3
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.2e-231 805.8 841 55.8
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 7.0e-231 804.7 842 57.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-230 803.9 802 58.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.0e-229 800.8 850 55.5
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 3.0e-229 799.3 877 55.1
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.2e-227 793.9 928 51.2
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 8.1e-227 791.2 825 56.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 3.1e-226 789.3 881 54.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.1e-226 789.3 843 53.9
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.4e-223 779.6 736 59.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.2e-222 777.3 877 54.3
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 6.6e-221 771.5 881 52.2
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.6e-219 766.9 876 52.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.8e-219 766.1 853 53.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 4.4e-217 758.8 1008 47.1
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.3e-216 757.3 796 54.8
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.9e-216 756.1 726 58.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 8.4e-216 754.6 727 58.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 7.1e-215 751.5 886 50.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 6.6e-213 745.0 841 54.6
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.2e-210 735.3 786 56.9
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-209 732.6 755 57.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 9.3e-207 724.5 889 49.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.3e-203 714.1 569 70.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 6.2e-203 711.8 863 50.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.0e-202 709.1 885 49.6
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 4.9e-200 702.2 623 61.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 7.9e-190 668.3 862 48.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 2.3e-189 666.8 864 48.4
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.1e-183 647.9 846 48.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.4e-178 630.9 568 61.8
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.6e-177 626.7 920 43.3
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.3e-176 624.4 1087 40.1
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.1e-175 621.3 880 45.5
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.9e-168 596.7 464 70.5
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.4e-157 561.2 539 57.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.1e-156 558.1 730 46.2
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 7.0e-154 548.9 831 43.3
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.6e-153 547.0 855 42.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 5.0e-152 542.7 902 43.6
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 2.9e-144 516.9 774 43.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 1.2e-137 495.0 554 52.3
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.1e-130 471.9 857 37.0
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 7.8e-129 465.7 610 48.7
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 6.4e-115 419.5 556 45.9
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.9e-111 407.9 818 36.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.5e-111 407.5 351 65.8
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.4e-101 374.4 642 35.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.7e-91 341.7 425 50.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.4e-90 338.6 689 34.0
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 7.6e-84 316.2 307 57.0
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.7e-83 315.1 241 68.9
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.6e-62 245.4 307 52.1
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.8e-61 241.9 138 92.0
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.9e-52 210.3 233 51.5
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.9e-50 205.3 207 60.4
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.0e-35 156.4 182 52.7
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-29 136.0 395 31.6
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-28 131.0 271 36.5
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 4.5e-28 131.0 271 36.5
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.0e-23 115.5 314 28.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-23 114.8 179 43.6
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-23 114.8 179 43.6
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 7.7e-20 103.6 173 45.1
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-16 92.4 132 44.7
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.7e-14 85.9 72 66.7
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 4.9e-14 84.3 91 51.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 6.3e-14 84.0 101 45.5
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.1e-13 83.2 201 36.3
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-13 82.8 172 37.2
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 4.5e-12 77.8 97 40.2
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 2.5e-10 72.0 62 53.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-09 69.7 59 55.9
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 8.0e-09 67.0 212 26.9
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 8.0e-09 67.0 35 94.3
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-08 66.6 219 26.0
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-08 65.1 58 55.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.0e-08 64.7 73 49.3
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 5.2e-08 64.3 78 50.0
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 4.9e-06 57.8 58 55.2


User provided reference genes

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