Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1405 Fragaria x ananassa HOM05D008159 ORTHO05D009498 8.6e-44 179.9 87 100.0
FvH4_4g20450 Fragaria vesca HOM05D008159 ORTHO05D009498 8.0e-42 173.3 86 96.5
FAN12G1128 Fragaria x ananassa HOM05D008159 ORTHO05D009498 8.0e-42 173.3 86 96.5
RcHm_v2.0_Chr4g0425921 Rosa chinensis HOM05D008159 ORTHO05D009498 1.0e-41 172.9 86 96.5
MD13G1149600 Malus domestica HOM05D008159 ORTHO05D009498 8.3e-23 110.2 87 65.5
Prupe.1G113600 Prunus persica HOM05D008159 ORTHO05D009498 1.1e-22 109.8 72 79.2
MD16G1149900 Malus domestica HOM05D008159 ORTHO05D009498 1.2e-21 106.3 87 65.5
Thecc.04G305200 Theobroma cacao HOM05D008159 ORTHO05D009498 2.6e-16 88.6 85 58.8
Cc03_g00570 Coffea canephora HOM05D008159 ORTHO05D009498 5.8e-16 87.4 82 54.9
Duzib052G0731 Durio zibethinus HOM05D008159 ORTHO05D009498 1.4e-14 82.8 85 56.5
Manes.15G002400 Manihot esculenta HOM05D008159 ORTHO05D009498 4.2e-14 81.3 85 56.5
Cc02_g35240 Coffea canephora HOM05D008159 ORTHO05D009498 7.1e-14 80.5 98 51.0
Ciclev10006357m.g Citrus clementina HOM05D008159 ORTHO05D009498 1.6e-13 79.3 85 54.1
Potri.008G102400 Populus trichocarpa HOM05D008159 ORTHO05D009498 1.6e-13 79.3 70 65.7
Glyma.15G138300 Glycine max HOM05D008159 ORTHO05D009498 2.1e-13 79.0 85 51.8
Thhalv10005580m.g Eutrema salsugineum HOM05D008159 ORTHO05D009498 3.5e-13 78.2 80 55.0
CARHR287950 Cardamine hirsuta HOM05D008159 ORTHO05D009498 7.8e-13 77.0 83 51.8
Gorai.006G080300 Gossypium raimondii HOM05D008159 ORTHO05D009498 7.8e-13 77.0 85 54.1
A06p38300 Brassica napus HOM05D008159 ORTHO05D009498 2.3e-12 75.5 80 52.5
BraA06t26745Z Brassica rapa HOM05D008159 ORTHO05D009498 2.3e-12 75.5 80 52.5
CiPaw.07G030900 Carya illinoinensis HOM05D008159 ORTHO05D009498 3.0e-12 75.1 91 47.3
C07p39940 Brassica napus HOM05D008159 ORTHO05D009498 3.9e-12 74.7 80 52.5
BolC7t44526H Brassica oleracea HOM05D008159 ORTHO05D009498 3.9e-12 74.7 80 52.5
THA.LOC109116907 Tarenaya hassleriana HOM05D008159 ORTHO05D009498 3.9e-12 74.7 83 55.4
Carub.0008s0940 Capsella rubella HOM05D008159 ORTHO05D009498 6.6e-12 73.9 80 51.2
Rhsim04G0241600 Rhododendron simsii HOM05D008159 ORTHO05D009498 6.6e-12 73.9 96 47.9
Sp2g19830 Schrenkiella parvula HOM05D008159 ORTHO05D009498 6.6e-12 73.9 80 50.0
SpUn0021_0020 Schrenkiella parvula HOM05D008159 ORTHO05D009498 6.6e-12 73.9 80 50.0
AT5G49525 Arabidopsis thaliana HOM05D008159 ORTHO05D009498 1.1e-11 73.2 83 50.6
Manes.09G177901 Manihot esculenta HOM05D008159 ORTHO05D009498 1.1e-11 73.2 97 46.4
Eucgr.H03298 Eucalyptus grandis HOM05D008159 ORTHO05D009498 2.5e-11 72.0 93 49.5
Gohir.D09G065600 Gossypium hirsutum HOM05D008159 ORTHO05D009498 2.5e-11 72.0 85 52.9
Potri.010G148300 Populus trichocarpa HOM05D008159 ORTHO05D009498 2.5e-11 72.0 85 51.8
vmacro07951 Vaccinium macrocarpon HOM05D008159 ORTHO05D009498 3.3e-11 71.6 93 48.4
CiPaw.01G135400 Carya illinoinensis HOM05D008159 ORTHO05D009498 7.3e-11 70.5 86 43.0
TAR365G1059 Trochodendron aralioides HOM05D001895 ORTHO05D002082 9.6e-11 70.1 87 52.9
QL03p016142 Quercus lobata HOM05D008159 ORTHO05D009498 1.6e-10 69.3 87 44.8
QL03p016152 Quercus lobata HOM05D008159 ORTHO05D009498 1.6e-10 69.3 87 44.8
QL03p016180 Quercus lobata HOM05D008159 ORTHO05D009498 1.6e-10 69.3 87 44.8
Cfa006721 Carpinus fangiana HOM05D008159 ORTHO05D009498 2.1e-10 68.9 88 45.5
Eucgr.H04070 Eucalyptus grandis HOM05D008159 ORTHO05D009498 2.1e-10 68.9 91 52.7
Oeu053734.1 Olea europaea HOM05D008159 ORTHO05D009498 4.8e-10 67.8 102 43.1
PGSC0003DMG402002794 Solanum tuberosum HOM05D008159 ORTHO05D009498 8.1e-10 67.0 96 42.7
DCAR_005440 Daucus carota HOM05D008159 ORTHO05D009498 1.1e-09 66.6 87 40.2
Eucgr.B03969 Eucalyptus grandis HOM05D008159 ORTHO05D009498 1.8e-09 65.9 82 54.9
Lj6g0007339 Lotus japonicus HOM05D008159 ORTHO05D009498 1.8e-09 65.9 85 49.4
Duzib177G0425 Durio zibethinus HOM05D009594 ORTHO05D009498 3.1e-09 65.1 85 43.5
Migut.B00941 Erythranthe guttata HOM05D008159 ORTHO05D009498 4.0e-09 64.7 94 46.8
EL10Ac3g05544 Beta vulgaris HOM05D008159 ORTHO05D009498 6.9e-09 63.9 93 44.1
Lalb_Chr21g0310201 Lupinus albus HOM05D008159 ORTHO05D009498 2.0e-08 62.4 87 44.8
Glyma.09G033500 Glycine max HOM05D008159 ORTHO05D009498 7.6e-08 60.5 60 55.0
Lalb_Chr06g0167441 Lupinus albus HOM05D008159 ORTHO05D009498 7.6e-08 60.5 87 44.8
Atru.chr4.3059 Acer truncatum HOM05D008159 ORTHO05D009498 9.9e-08 60.1 86 45.3
Haze_01341 Corylus avellana HOM05D008159 ORTHO05D009498 9.9e-08 60.1 76 40.8
Haze_01342 Corylus avellana HOM05D008159 ORTHO05D009498 9.9e-08 60.1 76 40.8
Gohir.A10G174300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 9.9e-08 60.1 35 82.9
Gohir.D10G180800 Gossypium hirsutum HOM05D008159 ORTHO05D009498 9.9e-08 60.1 35 82.9
Migut.G00043 Erythranthe guttata HOM05D065555 ORTHO05D009498 1.3e-07 59.7 76 55.3
Gohir.A11G274300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 1.3e-07 59.7 85 43.5
Gohir.D11G284500 Gossypium hirsutum HOM05D008159 ORTHO05D009498 1.3e-07 59.7 85 43.5
Gorai.007G307600 Gossypium raimondii HOM05D008159 ORTHO05D009498 1.3e-07 59.7 85 43.5
Lalb_Chr20g0120721 Lupinus albus HOM05D008159 ORTHO05D009498 2.9e-07 58.5 79 40.5
Medtr2g033600 Medicago truncatula HOM05D008159 ORTHO05D009498 2.9e-07 58.5 82 43.9
Potri.005G011400 Populus trichocarpa HOM05D009594 ORTHO05D009498 8.4e-07 57.0 94 41.5
Ah.06g196160 Amaranthus hybridus HOM05D009594 ORTHO05D009498 1.4e-06 56.2 85 45.9
Glyma.20G095900 Glycine max HOM05D009594 ORTHO05D009498 1.9e-06 55.8 87 42.5
Phvul.007G202400 Phaseolus vulgaris HOM05D008159 ORTHO05D009498 1.9e-06 55.8 63 49.2
Ciclev10003072m.g Citrus clementina HOM05D009594 ORTHO05D009498 2.4e-06 55.5 67 47.8
Potri.013G007500 Populus trichocarpa HOM05D009594 ORTHO05D009498 3.2e-06 55.1 92 42.4
TAR636G1322 Trochodendron aralioides HOM05D008159 ORTHO05D009498 3.2e-06 55.1 85 43.5
TAR636G3676 Trochodendron aralioides HOM05D008159 ORTHO05D009498 3.2e-06 55.1 85 43.5
Migut.N00944 Erythranthe guttata HOM05D008159 ORTHO05D009498 4.2e-06 54.7 90 42.2
TPR.G17642 Trifolium pratense HOM05D008159 ORTHO05D009498 5.4e-06 54.3 80 43.8
CARHR186770 Cardamine hirsuta HOM05D009594 ORTHO05D009498 9.3e-06 53.5 76 44.7


User provided reference genes

Program Settings