Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.3e-82 309.7 157 100.0
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 6.4e-82 307.4 157 98.7
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 8.1e-77 290.4 182 84.6
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 1.7e-74 282.7 160 88.8
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 2.0e-59 232.6 160 75.0
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 6.5e-58 227.6 159 71.1
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 2.5e-49 199.1 162 62.3
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 1.6e-48 196.4 146 69.2
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 1.0e-47 193.7 156 63.5
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 3.9e-47 191.8 148 66.9
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 8.8e-47 190.7 127 76.4
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 8.8e-47 190.7 127 76.4
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.2e-45 186.0 129 72.9
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 2.2e-45 186.0 122 76.2
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 8.2e-45 184.1 128 74.2
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 8.2e-45 184.1 157 62.4
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.1e-44 183.7 168 57.7
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 1.1e-44 183.7 140 69.3
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.1e-44 183.7 154 62.3
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.1e-44 183.7 154 62.3
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.4e-44 183.3 146 65.8
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 1.8e-44 183.0 146 64.4
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 1.8e-44 183.0 122 73.8
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 3.1e-44 182.2 143 67.1
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 3.1e-44 182.2 143 67.1
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 4.1e-44 181.8 175 58.3
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 6.9e-44 181.0 147 63.9
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 6.9e-44 181.0 125 71.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 9.1e-44 180.6 138 68.1
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 9.1e-44 180.6 140 65.0
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 2.0e-43 179.5 117 76.1
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 2.0e-43 179.5 123 71.5
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 3.4e-43 178.7 150 61.3
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 5.9e-43 177.9 165 60.0
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.0e-42 177.2 118 73.7
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 1.7e-42 176.4 121 72.7
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 1.7e-42 176.4 148 62.2
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.9e-42 175.6 149 60.4
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 5.0e-42 174.9 147 63.3
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 5.0e-42 174.9 125 69.6
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 5.0e-42 174.9 150 60.7
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 6.5e-42 174.5 121 69.4
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 1.1e-41 173.7 140 62.1
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.1e-41 173.7 155 60.6
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 1.4e-41 173.3 120 69.2
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.4e-41 173.3 192 50.0
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 1.9e-41 172.9 124 69.4
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 1.9e-41 172.9 123 68.3
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 2.5e-41 172.6 155 60.0
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 3.2e-41 172.2 121 69.4
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 4.2e-41 171.8 119 67.2
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 4.2e-41 171.8 113 75.2
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 4.2e-41 171.8 155 60.0
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 5.5e-41 171.4 122 69.7
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 7.2e-41 171.0 119 69.7
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 7.2e-41 171.0 119 71.4
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.2e-41 171.0 120 70.8
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 9.4e-41 170.6 125 66.4
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 2.1e-40 169.5 159 59.1
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.1e-40 169.5 137 62.8
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 2.7e-40 169.1 133 65.4
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 2.7e-40 169.1 133 65.4
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 3.6e-40 168.7 133 64.7
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 6.1e-40 167.9 119 71.4
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 7.9e-40 167.5 133 63.9
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 7.9e-40 167.5 133 63.9
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.0e-39 167.2 121 68.6
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.0e-39 167.2 121 68.6
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 1.0e-39 167.2 125 64.8
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.8e-39 166.4 122 67.2
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 1.8e-39 166.4 163 60.7
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 3.0e-39 165.6 118 67.8
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 3.0e-39 165.6 131 62.6
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 3.9e-39 165.2 125 67.2
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 3.9e-39 165.2 121 67.8
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 5.2e-39 164.9 104 79.8
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 6.7e-39 164.5 116 68.1
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.5e-38 163.3 144 58.3
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 2.0e-38 162.9 133 65.4
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 2.6e-38 162.5 149 57.7
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 7.4e-38 161.0 137 64.2
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 2.2e-37 159.5 119 66.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 3.7e-37 158.7 110 69.1
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 6.3e-37 157.9 114 67.5
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 4.1e-36 155.2 162 53.7
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 7.0e-36 154.5 124 65.3
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 3.5e-35 152.1 162 53.1
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 4.5e-35 151.8 138 57.2
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 5.9e-35 151.4 119 63.9
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.0e-34 148.3 127 56.7
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 2.7e-32 142.5 91 73.6
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 1.8e-31 139.8 90 75.6
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 5.2e-31 138.3 155 51.6
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 2.0e-30 136.3 104 67.3
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 4.8e-29 131.7 142 54.2
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 6.3e-29 131.3 103 67.0
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 6.3e-29 131.3 129 51.2
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 1.4e-28 130.2 120 54.2
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 5.3e-28 128.3 155 49.7
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 1.3e-26 123.6 124 52.4
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.7e-26 123.2 101 63.4
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 6.5e-26 121.3 119 48.7
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 2.1e-24 116.3 109 54.1
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 2.1e-24 116.3 127 55.9
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.8e-23 113.2 110 56.4
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 8.8e-23 110.9 74 74.3
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.4e-20 103.6 69 75.4
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 8.6e-18 94.4 62 74.2
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 3.0e-15 85.9 54 79.6
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.0e-15 85.5 53 73.6
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.5e-14 83.6 96 51.0
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 9.8e-14 80.9 81 50.6
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 6.3e-13 78.2 48 79.2
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 1.3e-10 70.5 56 51.8
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 1.6e-08 63.5 78 52.6
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 8.0e-08 61.2 144 28.5


User provided reference genes

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