Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.0e-222 773.9 390 100.0
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.4e-210 736.1 407 92.6
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.3e-208 729.6 407 91.9
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 3.8e-200 701.4 407 87.7
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 7.7e-161 570.9 408 71.6
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 4.1e-154 548.5 384 71.9
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.4e-149 533.5 407 68.6
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.2e-145 520.4 418 62.9
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.3e-144 516.9 418 62.4
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 3.0e-144 515.8 407 70.5
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.5e-143 513.5 395 66.8
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 6.2e-142 508.1 397 65.0
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.4e-141 506.9 400 64.0
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 9.8e-140 500.7 337 74.8
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 2.2e-139 499.6 444 63.1
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 8.3e-139 497.7 363 68.0
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 1.2e-137 493.8 396 62.4
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.1e-137 493.0 396 62.4
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.0e-136 490.7 396 61.9
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.8e-134 482.6 368 66.3
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 4.7e-134 481.9 364 66.8
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.1e-133 480.7 398 62.6
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.8e-133 479.9 383 65.8
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 8.9e-133 477.6 369 64.8
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 5.8e-132 474.9 407 60.0
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 8.4e-131 471.1 387 62.5
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 6.0e-129 464.9 386 62.7
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.8e-125 453.4 409 59.2
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 6.8e-125 451.4 337 67.4
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 2.6e-124 449.5 394 58.4
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 3.4e-124 449.1 386 61.7
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 3.4e-124 449.1 366 62.3
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.1e-122 444.1 404 59.7
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.9e-122 443.4 407 58.5
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 9.3e-122 441.0 337 66.2
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.2e-121 440.7 367 60.8
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 2.1e-121 439.9 349 63.3
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.5e-119 433.7 393 58.5
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.5e-119 433.7 310 69.7
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.5e-119 433.7 340 66.2
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.5e-119 433.0 397 56.7
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 3.3e-119 432.6 393 57.0
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.3e-119 432.2 405 57.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 5.6e-119 431.8 387 57.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.3e-118 430.6 370 59.2
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.3e-118 430.6 397 56.2
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 6.2e-118 428.3 375 57.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.4e-117 426.4 369 58.5
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.0e-117 425.6 393 56.7
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.2e-116 424.1 372 58.3
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.2e-116 424.1 362 58.3
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.0e-116 423.3 334 62.6
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 2.0e-116 423.3 348 60.1
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.4e-116 422.5 323 64.7
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 4.4e-116 422.2 373 57.4
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 7.6e-116 421.4 326 65.3
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 9.9e-116 421.0 372 57.8
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.7e-115 420.2 369 58.3
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.2e-115 419.9 323 63.8
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 3.8e-115 419.1 350 60.3
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 7.1e-114 414.8 338 62.1
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 7.9e-113 411.4 322 61.8
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 5.1e-112 408.7 359 57.1
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.3e-110 404.1 401 53.9
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 1.1e-109 401.0 370 55.4
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.5e-108 397.1 407 52.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 2.6e-108 396.4 394 53.8
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.1e-106 388.3 246 76.8
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.2e-105 387.5 393 52.4
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.6e-105 387.1 331 57.7
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 1.6e-105 387.1 312 60.9
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 2.7e-105 386.3 292 66.4
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 2.7e-105 386.3 315 60.6
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 6.7e-104 381.7 315 60.0
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-103 380.9 303 61.4
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 4.3e-103 379.0 296 62.2
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 5.6e-103 378.6 372 55.4
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.6e-102 377.1 328 58.5
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 2.8e-102 376.3 300 61.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 3.1e-101 372.9 314 59.2
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 9.0e-101 371.3 410 50.2
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 8.4e-99 364.8 343 56.0
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.1e-98 361.7 310 61.3
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 7.9e-97 358.2 350 53.7
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.3e-96 357.5 226 75.2
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.1e-93 347.8 334 55.1
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 4.1e-93 345.9 360 50.0
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 5.3e-93 345.5 308 58.4
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 6.5e-91 338.6 225 70.2
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 3.0e-88 329.7 218 72.5
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.5e-87 327.4 334 51.5
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 3.7e-86 322.8 396 50.3
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.2e-84 317.8 335 50.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 1.7e-83 313.9 385 44.7
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.9e-82 310.5 391 49.6
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 3.2e-82 309.7 297 53.5
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.2e-81 307.8 319 50.5
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 3.1e-77 293.1 313 48.6
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 5.0e-75 285.8 226 62.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 3.2e-74 283.1 244 58.6
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.1e-72 275.8 345 43.8
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 4.4e-71 272.7 191 69.1
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.3e-54 218.0 182 62.1
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 4.5e-52 209.5 256 48.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.6e-47 193.7 153 62.1
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 4.7e-41 172.9 308 36.0
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.2e-38 164.1 207 44.0
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.1e-34 151.8 149 52.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.4e-31 139.8 360 28.6
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.7e-25 119.8 153 43.1
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 8.9e-24 115.5 163 39.9
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.8e-17 94.0 242 29.8
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.7e-17 93.2 165 37.0
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 4.3e-10 70.1 183 30.1
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.2e-09 68.6 186 28.5
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 6.2e-09 66.2 180 30.0
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 6.2e-09 66.2 181 29.3
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 8.1e-09 65.9 176 30.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 8.1e-09 65.9 190 30.0
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-08 65.5 45 62.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.1e-08 65.5 180 29.4
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 1.8e-08 64.7 187 29.9
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 6.9e-08 62.8 176 30.1
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 8.9e-08 62.4 188 27.7
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.0e-07 61.2 176 27.8
Nn8g40038 Nelumbo nucifera HOM05D006258 ORTHO05D007961 3.4e-07 60.5 258 21.3
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 7.6e-07 59.3 188 26.1
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 7.6e-07 59.3 188 26.1
Aa31LG6G1460 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.9e-06 56.6 297 25.6
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.9e-06 56.6 258 22.5


User provided reference genes

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