Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.5e-239 830.9 422 100.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.2e-233 810.1 415 98.8
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.2e-229 798.1 415 97.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.1e-226 789.6 415 96.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-226 789.6 415 96.9
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.6e-210 735.3 415 90.4
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.8e-199 697.2 414 85.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 9.5e-189 663.7 414 80.2
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 4.7e-180 634.8 413 77.2
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 6.4e-177 624.4 414 76.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 3.3e-173 612.1 413 75.5
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 7.3e-173 610.9 413 75.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 2.1e-172 609.4 413 73.1
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 6.2e-172 607.8 414 73.9
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 5.4e-168 594.7 418 70.3
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.3e-166 589.3 419 71.4
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 4.3e-165 585.1 412 71.1
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.1e-163 580.5 412 71.4
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.0e-162 576.2 385 74.8
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.3e-161 573.5 444 66.4
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 4.9e-161 571.6 413 68.8
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.4e-160 570.1 414 68.6
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.9e-160 569.7 412 68.7
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 9.3e-160 567.4 412 70.1
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-159 567.0 413 69.2
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 3.5e-159 565.5 416 69.0
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.3e-158 563.5 413 70.2
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.6e-158 561.2 414 67.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.6e-158 561.2 413 70.5
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.9e-157 559.7 413 70.2
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.3e-157 558.5 413 68.8
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 9.6e-157 557.4 406 69.2
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 8.1e-156 554.3 412 68.0
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 2.4e-155 552.7 414 69.1
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.0e-155 552.0 413 67.3
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 6.9e-155 551.2 414 66.9
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 6.9e-155 551.2 411 67.4
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 6.9e-155 551.2 413 68.0
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 9.0e-155 550.8 412 67.5
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.5e-154 550.1 413 67.3
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.0e-154 549.7 414 66.9
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.6e-154 549.3 412 67.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 5.8e-154 548.1 414 66.9
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.3e-153 547.0 480 60.6
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-153 546.6 380 71.8
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.4e-152 542.7 416 66.1
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 2.4e-152 542.7 413 67.3
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.3e-152 540.8 301 92.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.7e-151 539.3 412 66.0
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.7e-151 539.3 413 66.8
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.0e-150 537.3 399 68.9
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.0e-150 537.3 387 68.7
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 4.3e-149 531.9 413 65.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.8e-148 529.3 417 67.1
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 6.2e-148 528.1 413 63.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.8e-147 526.6 413 64.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 2.6e-146 522.7 415 63.4
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 7.6e-146 521.2 413 63.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 7.6e-146 521.2 413 65.6
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.2e-145 519.6 411 64.0
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 3.2e-144 515.8 405 66.9
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.7e-143 512.7 386 67.1
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 7.9e-143 511.1 414 65.0
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 3.9e-142 508.8 388 64.9
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.9e-141 506.5 355 71.3
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 8.2e-140 501.1 414 61.1
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.4e-139 499.6 421 61.3
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 2.4e-139 499.6 413 60.5
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 6.9e-139 498.0 419 65.9
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.2e-137 493.0 395 62.8
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 9.3e-136 487.6 420 58.8
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.0e-134 484.2 413 61.5
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 3.3e-133 479.2 421 57.5
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 5.7e-133 478.4 383 62.7
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-132 477.2 352 70.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.4e-131 473.0 386 61.1
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 5.3e-131 471.9 420 57.1
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.5e-130 470.3 347 69.5
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 5.0e-129 465.3 407 58.7
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 6.5e-129 464.9 416 57.5
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.2e-128 462.2 396 60.4
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 7.2e-128 461.5 360 63.6
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.6e-127 460.3 370 65.4
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 2.3e-126 456.4 362 64.1
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.8e-124 449.5 392 56.4
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 6.3e-124 448.4 351 65.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 5.3e-123 445.3 419 57.8
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 7.7e-122 441.4 418 57.2
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.3e-121 440.7 352 64.5
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 3.8e-121 439.1 345 65.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 3.2e-120 436.0 410 54.9
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 5.5e-120 435.3 405 56.5
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.7e-119 433.0 417 56.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 2.7e-119 433.0 416 56.5
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 3.6e-119 432.6 419 55.4
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.4e-118 430.6 417 56.1
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.3e-118 429.9 388 58.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.3e-117 426.0 397 56.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.3e-115 418.7 416 52.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 7.0e-115 418.3 417 54.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 7.0e-115 418.3 354 60.5
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.4e-114 416.0 420 55.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.9e-114 415.2 429 51.0
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 2.7e-111 406.4 417 53.5
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.2e-108 396.7 428 48.6
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.3e-94 350.1 198 92.4
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.5e-93 347.4 194 92.3
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.4e-91 339.0 265 63.4
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.7e-90 335.1 370 48.1
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 5.7e-85 318.9 457 39.8
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 2.4e-83 313.5 223 70.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 4.5e-82 309.3 467 37.5
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.3e-80 302.8 354 51.1
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 9.8e-77 291.6 316 49.1
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.2e-71 272.3 182 75.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.7e-68 264.2 274 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 6.6e-65 252.3 317 45.7
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.6e-63 247.7 160 76.9
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.6e-63 247.7 277 54.5
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.6e-58 231.1 233 54.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.3e-48 196.4 132 74.2
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.3e-48 195.7 140 74.3
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 4.0e-46 189.9 137 70.1
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 4.4e-45 186.4 403 32.0
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.8e-45 186.0 121 81.0
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.6e-37 160.6 332 31.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.7e-36 157.9 156 53.8
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.0e-33 147.1 81 91.4
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 5.1e-33 146.4 167 52.1
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 9.6e-32 142.1 94 69.1
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 3.2e-27 127.1 598 23.4
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.6e-24 115.5 204 40.2
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 6.5e-20 102.8 123 44.7
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 8.7e-17 92.4 48 89.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.1e-10 71.2 112 42.0
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 6.1e-10 69.7 52 67.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 7.9e-10 69.3 81 46.9
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 6.7e-09 66.2 323 22.6
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.4e-06 58.5 152 30.9
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 2.4e-06 57.8 31 77.4


User provided reference genes

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