Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1177.5 592 100.0
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 0.0e+00 1147.9 590 98.1
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1132.9 590 97.3
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1115.1 621 92.3
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1114.0 579 97.2
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1086.2 616 91.2
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.2e-306 1055.8 602 89.9
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 2.3e-273 945.3 594 82.8
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 3.4e-269 931.4 594 80.1
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 7.4e-264 913.7 597 77.6
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 4.6e-258 894.4 596 76.7
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.1e-256 889.8 597 76.0
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 3.7e-255 884.8 543 80.8
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 2.0e-253 879.0 590 76.8
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.0e-252 876.7 594 74.4
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.3e-252 876.3 594 74.4
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.7e-252 875.9 588 74.7
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.2e-252 875.5 596 74.8
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 2.7e-250 868.6 591 75.5
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 6.1e-250 867.5 543 79.4
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.8e-249 865.9 598 74.9
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 8.8e-249 863.6 595 74.3
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.1e-248 863.2 614 73.0
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 4.4e-248 861.3 593 75.0
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 4.4e-248 861.3 596 73.0
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.3e-247 859.8 598 74.4
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 1.3e-247 859.8 537 80.3
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.7e-247 859.4 542 78.6
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.2e-247 859.0 597 74.5
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 4.8e-247 857.8 543 78.5
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 2.4e-246 855.5 600 73.3
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 5.9e-245 850.9 592 73.3
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.9e-245 850.9 576 74.8
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 5.9e-245 850.9 592 73.5
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.0e-244 850.1 544 77.9
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 2.2e-244 849.0 593 71.8
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 2.9e-244 848.6 594 74.6
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 3.8e-244 848.2 543 77.3
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 5.0e-244 847.8 604 72.4
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 6.5e-244 847.4 592 74.3
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 1.1e-243 846.7 543 77.3
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 2.5e-243 845.5 590 73.6
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 5.5e-243 844.3 546 76.6
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 2.1e-242 842.4 585 73.0
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 2.7e-242 842.0 548 76.5
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 3.6e-242 841.6 544 76.7
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 3.6e-242 841.6 587 72.6
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 8.0e-242 840.5 543 76.6
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.5e-240 836.3 602 71.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 2.0e-240 835.9 547 75.9
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 2.0e-240 835.9 543 77.2
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 2.6e-240 835.5 601 71.2
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 2.6e-240 835.5 598 71.6
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 2.6e-240 835.5 605 71.4
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 2.6e-240 835.5 605 71.4
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 3.3e-240 835.1 601 70.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 4.4e-240 834.7 598 71.6
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 7.4e-240 833.9 590 72.5
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 9.7e-240 833.6 546 76.0
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 9.7e-240 833.6 585 73.8
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.2e-239 832.4 591 73.1
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 2.4e-238 828.9 543 75.3
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 7.0e-238 827.4 541 76.0
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.6e-237 826.2 597 72.0
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.6e-237 826.2 642 68.2
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.5e-237 825.1 598 70.9
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 5.9e-237 824.3 591 70.2
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 5.9e-237 824.3 593 71.5
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.7e-236 822.8 593 72.2
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.9e-236 822.0 521 77.4
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 5.0e-236 821.2 597 71.9
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.5e-235 819.7 542 75.5
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.1e-234 815.8 596 70.1
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 2.1e-234 815.8 552 74.5
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 6.7e-233 810.8 584 70.2
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.0e-232 809.3 605 69.1
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.7e-231 805.1 588 69.9
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.1e-230 802.0 601 69.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 3.5e-229 798.5 544 72.2
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 3.5e-229 798.5 526 76.2
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.2e-227 791.6 523 76.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 6.1e-226 787.7 574 69.0
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 2.7e-221 772.3 522 73.0
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 8.6e-220 767.3 514 76.8
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 1.9e-219 766.1 543 72.6
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.9e-219 766.1 595 67.1
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 6.8e-217 757.7 528 72.3
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 7.5e-216 754.2 520 71.9
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.2e-215 752.7 597 66.7
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 2.2e-215 752.7 594 65.2
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.1e-214 750.4 591 66.7
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 4.3e-211 738.4 463 77.3
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 1.2e-210 736.9 519 73.2
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.6e-210 736.5 523 72.8
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 2.8e-210 735.7 513 74.7
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 3.6e-210 735.3 522 72.4
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 3.9e-204 715.3 444 77.9
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 6.4e-199 698.0 494 70.9
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.1e-193 680.6 444 76.6
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.8e-193 679.9 595 62.7
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.0e-192 676.4 566 62.5
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 7.5e-192 674.5 531 66.7
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.2e-191 672.9 543 63.5
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.3e-188 663.7 497 70.2
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 3.3e-187 659.1 520 63.8
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 5.8e-184 648.3 512 63.5
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.1e-177 625.9 519 62.8
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.8e-175 619.0 380 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.4e-158 563.9 449 63.0
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 2.5e-150 536.6 391 71.9
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.1e-118 431.4 326 64.4
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.8e-106 390.2 200 96.0
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-90 337.8 257 66.9
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-65 252.3 274 50.0
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-56 225.3 206 54.9
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.4e-52 211.1 143 72.0
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.7e-50 204.9 141 73.8
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 3.7e-37 160.6 101 72.3
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.6e-35 152.9 100 70.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.1e-32 143.3 101 64.4
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 3.6e-24 117.5 78 76.9
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 6.7e-23 113.2 67 74.6
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.3e-21 109.0 138 46.4
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.7e-21 107.5 66 74.2
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 9.1e-20 102.8 73 64.4
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 8.5e-18 96.3 65 69.2
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 8.5e-18 96.3 65 69.2
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 4.2e-17 94.0 68 66.2
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 4.2e-17 94.0 68 66.2
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 2.3e-15 88.2 70 65.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 8.8e-15 86.3 53 77.4
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 9.1e-12 76.3 66 57.6
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.0e-06 58.5 40 67.5
CDE06G1756 Ceratophyllum demersum HOM05D005895 ORTHO05D007916 3.3e-06 57.8 101 39.6
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 4.4e-06 57.4 346 24.0


User provided reference genes

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