Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 6.6e-31 136.7 69 100.0
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 3.3e-30 134.4 69 98.6
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.3e-30 134.4 69 98.6
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.3e-30 134.4 69 98.6
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 1.8e-28 128.6 69 95.7
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 3.4e-27 124.4 69 89.9
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 2.0e-19 98.6 69 73.9
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 1.3e-18 95.9 72 72.2
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.1e-17 92.8 72 68.1
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 8.7e-15 83.2 64 60.9
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 3.3e-14 81.3 64 59.4
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.6e-13 79.0 64 56.2
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 1.6e-13 79.0 64 57.8
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 2.1e-13 78.6 64 56.2
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 2.8e-13 78.2 64 57.8
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 2.8e-13 78.2 64 56.2
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 2.8e-13 78.2 64 56.2
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 2.8e-13 78.2 54 66.7
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 2.8e-13 78.2 67 56.7
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 3.6e-13 77.8 54 66.7
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 3.6e-13 77.8 54 66.7
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 4.8e-13 77.4 64 60.9
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 4.8e-13 77.4 66 56.1
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 6.2e-13 77.0 64 54.7
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 6.2e-13 77.0 64 54.7
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 6.2e-13 77.0 69 52.2
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 6.2e-13 77.0 64 57.8
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 6.2e-13 77.0 64 54.7
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 1.8e-12 75.5 54 63.0
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 1.8e-12 75.5 69 52.2
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 3.1e-12 74.7 72 55.6
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 4.0e-12 74.3 64 53.1
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 6.9e-12 73.6 67 58.2
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 6.9e-12 73.6 56 60.7
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 6.9e-12 73.6 56 60.7
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 6.9e-12 73.6 68 52.9
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 9.0e-12 73.2 63 60.3
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 2.0e-11 72.0 64 59.4
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 2.6e-11 71.6 54 64.8
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 4.5e-11 70.9 68 51.5
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 4.5e-11 70.9 70 54.3
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 4.5e-11 70.9 64 59.4
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 4.5e-11 70.9 64 59.4
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 4.5e-11 70.9 71 50.7
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 7.6e-11 70.1 64 59.4
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 2.9e-10 68.2 54 57.4
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 6.4e-10 67.0 54 57.4
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 6.4e-10 67.0 66 50.0
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 1.1e-09 66.2 54 57.4
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 1.4e-09 65.9 61 50.8
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.9e-09 65.5 65 46.2
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 1.9e-09 65.5 64 54.7
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 2.4e-09 65.1 63 57.1
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 4.2e-09 64.3 63 49.2
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.4e-09 63.9 67 46.3
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.4e-09 63.9 67 46.3
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 5.4e-09 63.9 70 50.0
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 7.1e-09 63.5 54 57.4
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 7.1e-09 63.5 54 53.7
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 9.3e-09 63.2 62 48.4
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 1.2e-08 62.8 54 53.7
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 1.2e-08 62.8 54 51.9
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.2e-08 62.8 54 50.0
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.2e-08 62.8 67 41.8
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 1.6e-08 62.4 81 44.4
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 2.1e-08 62.0 66 42.4
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 3.5e-08 61.2 66 43.9
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 4.6e-08 60.8 67 44.8
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 4.6e-08 60.8 68 48.5
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.0e-07 59.7 66 43.9
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.0e-07 59.7 54 48.1
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 1.0e-07 59.7 68 39.7
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 1.8e-07 58.9 62 48.4
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 1.8e-07 58.9 57 50.9
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 3.0e-07 58.2 68 41.2
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 3.9e-07 57.8 55 50.9
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 5.1e-07 57.4 56 46.4
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 2.5e-06 55.1 54 48.1
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 3.3e-06 54.7 50 46.0
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 7.4e-06 53.5 54 50.0


User provided reference genes

Program Settings