Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-187 659.8 351 100.0
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.0e-175 617.8 338 97.6
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 2.1e-157 559.3 340 90.3
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.1e-157 559.3 340 90.3
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.2e-147 526.9 351 82.9
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.0e-143 511.5 446 68.2
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.2e-138 496.1 348 79.3
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 2.8e-138 495.7 348 79.6
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 4.5e-136 488.4 348 78.4
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.5e-112 409.1 330 67.6
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.5e-110 402.9 339 66.7
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.8e-108 396.7 339 64.6
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 3.1e-108 396.0 322 67.1
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.9e-106 389.4 326 65.3
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.4e-105 387.1 326 65.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 3.2e-105 386.0 338 64.2
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 4.2e-105 385.6 324 64.8
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.2e-104 384.0 334 64.4
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.6e-104 383.6 345 62.3
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 4.6e-104 382.1 339 64.6
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.6e-104 382.1 324 64.5
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-103 379.4 329 63.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.0e-103 379.4 329 63.5
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 6.6e-103 378.3 372 58.3
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.6e-102 375.2 329 62.9
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.8e-101 372.9 349 60.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.2e-99 367.5 360 60.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.6e-99 366.3 336 61.3
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 4.4e-99 365.5 330 63.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.6e-99 364.8 327 63.0
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 9.9e-99 364.4 341 61.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.3e-98 364.0 339 61.4
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.7e-98 363.6 327 62.7
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.2e-98 363.2 329 61.1
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.9e-98 362.8 343 60.6
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 8.4e-98 361.3 336 59.8
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.2e-97 359.4 325 62.8
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 9.3e-97 357.8 353 58.9
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.7e-96 356.3 338 59.2
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.7e-96 356.3 343 59.2
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 4.6e-96 355.5 340 59.4
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 7.8e-96 354.8 339 59.0
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.3e-95 354.0 340 58.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.7e-95 353.6 339 58.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 5.1e-95 352.1 341 58.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.6e-95 351.7 340 59.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 6.6e-95 351.7 333 60.1
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.1e-94 350.9 342 57.6
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 2.5e-94 349.7 339 58.7
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.3e-94 349.4 326 60.1
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 5.6e-94 348.6 323 59.1
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 7.3e-94 348.2 339 58.4
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.6e-93 347.1 339 57.8
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.1e-92 344.4 326 59.2
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.4e-92 344.0 339 58.4
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.8e-92 343.6 323 60.7
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 5.3e-92 342.0 369 54.5
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 5.3e-92 342.0 338 57.7
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 5.3e-92 342.0 339 56.3
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.5e-91 340.5 326 59.2
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.0e-91 340.1 338 57.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 5.8e-91 338.6 344 56.4
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.9e-90 336.3 344 56.7
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.1e-89 334.3 338 56.8
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.9e-89 333.6 338 56.5
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 4.2e-89 332.4 341 56.0
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 9.3e-89 331.3 338 55.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-88 330.5 329 56.5
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.5e-88 329.3 385 51.4
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 3.5e-88 329.3 339 56.0
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 4.6e-88 328.9 340 55.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 6.0e-88 328.6 340 55.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.8e-87 327.0 528 42.8
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 2.3e-87 326.6 332 56.3
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 5.1e-87 325.5 339 54.6
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.1e-87 325.5 336 54.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 6.7e-87 325.1 343 54.8
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 6.7e-87 325.1 341 54.3
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.5e-86 323.9 322 56.2
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.5e-86 323.2 334 55.7
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 3.3e-86 322.8 415 48.2
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 2.1e-85 320.1 342 54.4
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.1e-85 320.1 342 55.0
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.1e-85 318.2 326 54.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.1e-84 317.8 437 47.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.4e-84 316.6 323 54.2
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.4e-84 316.6 339 53.1
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.3e-84 315.5 377 51.5
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 5.3e-84 315.5 342 53.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.2e-83 314.3 321 55.5
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.5e-83 313.9 361 50.7
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.0e-82 311.2 280 61.8
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.9e-82 309.7 333 54.4
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 3.8e-82 309.3 344 51.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.4e-81 307.4 340 52.1
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.2e-80 304.3 351 51.0
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.6e-80 303.9 324 53.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 2.1e-80 303.5 290 60.7
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 4.3e-78 295.8 338 52.7
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.6e-77 293.9 265 60.8
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 4.8e-77 292.4 331 52.9
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 4.1e-76 289.3 280 57.1
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 5.3e-76 288.9 324 50.0
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.2e-74 283.5 326 53.1
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 3.8e-74 282.7 326 51.8
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 7.9e-72 275.0 280 54.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.3e-71 274.2 375 46.9
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.7e-71 271.9 340 48.5
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 8.7e-71 271.6 298 52.3
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.1e-70 271.2 324 51.5
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.8e-69 266.5 355 49.3
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 4.8e-69 265.8 337 47.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.1e-68 264.6 326 49.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 2.2e-66 256.9 337 48.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.9e-66 256.5 258 55.8
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-66 256.1 192 66.7
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 8.5e-66 255.0 280 54.6
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.4e-60 236.9 274 51.1
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.5e-57 226.9 330 42.4
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.3e-54 216.5 250 54.0
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-52 210.7 155 82.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.5e-51 206.5 229 54.6
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.3e-50 204.5 342 41.8
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.2e-49 199.5 341 40.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 4.1e-44 183.0 126 72.2
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.9e-41 174.1 158 55.7
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.3e-39 167.2 201 51.7
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 3.4e-38 163.3 319 37.3
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 9.8e-38 161.8 124 68.5
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 2.4e-36 157.1 342 36.5
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.6e-35 154.5 119 62.2
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.7e-34 151.0 178 48.3
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 3.8e-34 149.8 201 49.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 4.2e-33 146.4 338 32.5
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.0e-31 141.7 105 64.8
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 5.2e-31 139.4 99 69.7
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 6.8e-31 139.0 364 31.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.3e-26 124.0 317 32.2
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 8.6e-26 122.1 135 54.8
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.8e-23 114.4 85 67.1
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.8e-23 114.4 85 67.1
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 8.9e-23 112.1 200 39.5
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.2e-22 111.7 129 55.0
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.7e-22 109.4 75 70.7
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 8.3e-21 105.5 179 43.0
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.1e-20 103.2 117 50.4
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 7.0e-20 102.4 115 53.9
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.1e-16 90.9 93 54.8
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-12 78.2 125 39.2
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 3.3e-09 67.0 71 59.2
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 6.2e-08 62.8 85 48.2
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 6.2e-08 62.8 90 45.6
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 6.2e-08 62.8 151 33.1
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 8.1e-08 62.4 85 45.9
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-07 61.6 90 45.6
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 8.9e-07 58.9 91 47.3
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 8.9e-07 58.9 91 47.3
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 2.6e-06 57.4 91 44.0


User provided reference genes

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