Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.6e-42 174.9 83 100.0
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-41 172.2 83 98.8
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.2e-39 166.0 83 95.2
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-38 162.2 83 94.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 8.8e-38 159.8 83 92.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.8e-36 154.1 83 89.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.2e-20 102.1 86 62.8
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 5.3e-19 97.4 85 61.2
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 7.0e-19 97.1 86 60.5
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 4.5e-18 94.4 83 61.4
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-17 93.2 85 60.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-17 93.2 85 60.0
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.7e-17 92.4 85 60.0
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.8e-17 91.3 85 58.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.8e-17 91.3 90 58.9
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 3.8e-17 91.3 84 56.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.5e-16 89.4 85 57.6
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.9e-16 89.0 82 58.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.9e-16 89.0 84 59.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.5e-16 88.6 81 61.7
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 54.8
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.2e-16 88.2 86 58.1
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.2e-16 88.2 86 58.1
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 4.2e-16 87.8 84 56.0
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 5.5e-16 87.4 79 59.5
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.2e-16 87.0 82 59.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 7.2e-16 87.0 82 57.3
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 9.4e-16 86.7 72 61.1
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 9.4e-16 86.7 86 58.1
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 9.4e-16 86.7 73 60.3
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 9.4e-16 86.7 83 57.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.6e-15 85.9 81 60.5
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.6e-15 85.9 81 60.5
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.6e-15 85.9 70 61.4
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 2.7e-15 85.1 83 56.6
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 3.6e-15 84.7 75 61.3
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 4.7e-15 84.3 79 58.2
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 6.1e-15 84.0 83 51.8
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.0e-15 83.6 78 59.0
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.0e-15 83.6 91 52.7
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.0e-15 83.6 83 57.8
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.0e-14 83.2 81 56.8
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.0e-14 83.2 81 56.8
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-14 82.8 83 55.4
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-14 82.8 81 55.6
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.4e-14 82.8 74 56.8
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.8e-14 82.4 74 58.1
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.3e-14 82.0 74 56.8
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.0e-14 81.6 85 55.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 3.0e-14 81.6 80 53.8
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.0e-14 81.6 70 58.6
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.0e-14 81.3 86 55.8
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 4.0e-14 81.3 74 55.4
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 5.2e-14 80.9 84 51.2
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 5.2e-14 80.9 83 55.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.2e-14 80.9 92 51.1
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.2e-14 80.9 83 51.8
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 6.8e-14 80.5 74 56.8
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 6.8e-14 80.5 75 58.7
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 8.8e-14 80.1 73 58.9
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.2e-13 79.7 87 51.7
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.6e-13 78.6 70 60.0
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 4.4e-13 77.8 76 57.9
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.7e-13 77.4 82 50.0
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-12 76.3 84 47.6
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-12 76.3 83 50.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-12 76.3 83 50.6
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.7e-12 75.9 86 53.5
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.7e-12 75.9 76 52.6
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.7e-12 75.9 68 60.3
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.2e-12 75.5 76 52.6
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.2e-12 75.5 68 58.8
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.2e-12 75.5 74 56.8
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.2e-12 75.5 90 47.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 2.2e-12 75.5 83 53.0
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.8e-12 75.1 84 51.2
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.7e-12 74.7 83 56.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 4.8e-12 74.3 92 47.8
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 4.8e-12 74.3 74 54.1
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 6.3e-12 73.9 88 46.6
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 8.3e-12 73.6 82 48.8
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 8.3e-12 73.6 83 51.8
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 77 51.9
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 81 51.9
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 82 48.8
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.1e-11 73.2 88 48.9
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 82 46.3
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 47.0
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 47.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 74 51.4
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 45.8
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 86 46.5
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.4e-11 72.0 82 52.4
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.4e-11 72.0 74 55.4
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.1e-11 71.6 74 51.4
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 3.1e-11 71.6 81 46.9
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-11 71.2 92 48.9
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.1e-11 71.2 74 54.1
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.1e-11 71.2 82 47.6
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 4.1e-11 71.2 82 47.6
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 5.4e-11 70.9 78 53.8
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.4e-11 70.9 79 54.4
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 7.0e-11 70.5 89 50.6
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 9.1e-11 70.1 79 50.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 9.1e-11 70.1 79 50.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 9.1e-11 70.1 73 49.3
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 50.0
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.6e-10 69.3 74 50.0
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.0e-10 68.9 86 46.5
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.7e-10 68.6 76 51.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.7e-10 68.6 87 46.0
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 3.5e-10 68.2 79 51.9
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 4.5e-10 67.8 77 50.6
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.5e-10 67.8 84 51.2
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 5.9e-10 67.4 72 50.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 5.9e-10 67.4 72 50.0
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.9e-10 67.4 85 44.7
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.9e-10 67.4 76 50.0
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.7e-10 67.0 74 48.6
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.0e-09 66.6 74 48.6
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.0e-09 66.6 74 48.6
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.0e-09 66.6 87 44.8
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.0e-09 66.6 72 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.3e-09 66.2 82 46.3
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-09 65.9 54 59.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.7e-09 65.9 74 48.6
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.2e-09 65.5 54 59.3
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.2e-09 65.5 77 46.8
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 45.1
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 45.1
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 45.1
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 45.1
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 6.5e-09 63.9 84 45.2
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 6.5e-09 63.9 84 46.4
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.5e-09 63.9 74 45.9
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 6.5e-09 63.9 80 47.5
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 8.5e-09 63.5 71 47.9
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 8.5e-09 63.5 75 53.3
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.5e-08 62.8 87 44.8
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 2.5e-08 62.0 90 45.6
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 3.2e-08 61.6 84 44.0
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.2e-08 61.2 70 48.6
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 7.2e-08 60.5 75 48.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.6e-07 59.3 82 46.3
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 2.7e-07 58.5 84 45.2
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 2.7e-07 58.5 85 44.7
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.7e-07 57.8 78 47.4
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 4.7e-07 57.8 80 50.0
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 6.1e-07 57.4 84 40.5
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 6.1e-07 57.4 71 47.9
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 8.0e-07 57.0 79 46.8
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.4e-06 56.2 76 43.4
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.4e-06 56.2 84 44.0
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-06 55.8 69 50.7
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 3.0e-06 55.1 70 44.3
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 3.0e-06 55.1 70 50.0
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 4.0e-06 54.7 89 43.8
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 4.0e-06 54.7 86 43.0
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 4.0e-06 54.7 86 43.0
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 5.2e-06 54.3 73 41.1
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 6.8e-06 53.9 80 45.0
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.8e-06 53.9 52 55.8


User provided reference genes

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