Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1017 Fragaria x ananassa HOM05D007497 ORTHO05D009706 9.3e-292 1006.1 503 100.0
FAN12G1328 Fragaria x ananassa HOM05D007497 ORTHO05D009706 5.8e-286 986.9 503 97.6
FAN17G0169 Fragaria x ananassa HOM05D007497 ORTHO05D009706 6.5e-285 983.4 506 97.6
FvH4_4g23250 Fragaria vesca HOM05D007497 ORTHO05D009706 5.3e-263 910.6 503 91.8
RcHm_v2.0_Chr4g0429611 Rosa chinensis HOM05D007497 ORTHO05D009706 3.7e-248 861.3 503 86.9
Prupe.1G221400 Prunus persica HOM05D007497 ORTHO05D009706 1.2e-230 803.1 503 79.7
MD16G1124200 Malus domestica HOM05D007497 ORTHO05D009706 2.0e-230 802.4 503 80.1
QL03p051279 Quercus lobata HOM05D007497 ORTHO05D009706 8.3e-216 753.8 490 75.7
Cfa009399 Carpinus fangiana HOM05D007497 ORTHO05D009706 3.0e-213 745.3 497 73.4
PGR119G1254 Punica granatum HOM05D007497 ORTHO05D009706 1.5e-212 743.0 501 73.5
CSS0041912 Camellia sinensis var. sinensis HOM05D007497 ORTHO05D009706 1.9e-212 742.7 500 71.8
CsaV3_4G002920 Cucumis sativus L. HOM05D007497 ORTHO05D009706 1.9e-212 742.7 497 72.8
Hma1.2p1_0275F.1_g110530 Hydrangea macrophylla HOM05D007497 ORTHO05D009706 4.3e-212 741.5 499 72.7
Atru.chr11.2380 Acer truncatum HOM05D007497 ORTHO05D009706 5.2e-210 734.6 495 72.3
CANSAT01G1986 Cannabis sativa HOM05D007497 ORTHO05D009706 8.9e-210 733.8 495 72.1
Duzib052G0992 Durio zibethinus HOM05D007497 ORTHO05D009706 8.9e-210 733.8 510 71.4
TAR622G0177 Trochodendron aralioides HOM05D007497 ORTHO05D009706 8.9e-210 733.8 499 72.1
Sabra01G0043200 Salix brachista HOM05D007497 ORTHO05D009706 1.2e-209 733.4 507 71.2
Thecc.02G199900 Theobroma cacao HOM05D007497 ORTHO05D009706 1.5e-209 733.0 491 74.1
Manes.13G007600 Manihot esculenta HOM05D007497 ORTHO05D009706 2.6e-209 732.3 496 72.4
ECA233G4426 Erigeron canadensis HOM05D007497 ORTHO05D009706 1.3e-208 729.9 501 70.1
Eucgr.H04604 Eucalyptus grandis HOM05D007497 ORTHO05D009706 2.2e-208 729.2 495 71.9
Sed0000705 Sechium edule HOM05D007497 ORTHO05D009706 2.2e-208 729.2 501 71.1
Gorai.002G022900 Gossypium raimondii HOM05D007497 ORTHO05D009706 3.7e-208 728.4 496 71.6
CiPaw.05G105800 Carya illinoinensis HOM05D007497 ORTHO05D009706 4.9e-208 728.0 503 72.4
Gohir.D01G020400 Gossypium hirsutum HOM05D007497 ORTHO05D009706 6.4e-208 727.6 496 71.2
HanXRQChr12g0362231 Helianthus annuus HOM05D007497 ORTHO05D009706 8.3e-208 727.2 491 70.5
GSVIVG01000925001 Vitis vinifera HOM05D007497 ORTHO05D009706 7.1e-207 724.2 523 68.8
Ciclev10031387m.g Citrus clementina HOM05D007497 ORTHO05D009706 1.2e-206 723.4 496 71.2
vmacro01041 Vaccinium macrocarpon HOM05D007497 ORTHO05D009706 1.3e-205 719.9 561 64.7
Lj5g0001280 Lotus japonicus HOM05D007497 ORTHO05D009706 1.5e-204 716.5 503 69.8
arahy.Tifrunner.gnm1.ann1.USIX8K Arachis hypogaea HOM05D007497 ORTHO05D009706 1.9e-204 716.1 501 69.7
Hund06133 Selenicereus undatus HOM05D007497 ORTHO05D009706 2.5e-204 715.7 492 70.7
Nn4g22236 Nelumbo nucifera HOM05D007497 ORTHO05D009706 2.8e-203 712.2 507 70.0
MBI07_g24745_MAGBIO Magnolia biondii HOM05D007497 ORTHO05D009706 3.6e-203 711.8 503 69.2
Lalb_Chr21g0307731 Lupinus albus HOM05D007497 ORTHO05D009706 1.1e-202 710.3 492 70.1
Lj1A600T68 Lonicera japonica HOM05D007497 ORTHO05D009706 1.2e-201 706.8 535 65.6
AUR62005664 Chenopodium quinoa HOM05D007497 ORTHO05D009706 3.4e-201 705.3 497 69.0
ATR0582G029 Amborella trichopoda HOM05D007497 ORTHO05D009706 4.4e-201 704.9 493 69.8
Lsat_1_v5_gn_8_147300 Lactuca sativa HOM05D007497 ORTHO05D009706 4.4e-201 704.9 499 68.9
Phvul.007G001000 Phaseolus vulgaris HOM05D007497 ORTHO05D009706 1.7e-200 703.0 499 67.1
PSO478G2787 Papaver somniferum HOM05D007497 ORTHO05D009706 1.9e-199 699.5 525 66.9
CDE02G2130 Ceratophyllum demersum HOM05D007497 ORTHO05D009706 4.1e-199 698.4 499 67.7
Psat6g243880 Pisum sativum HOM05D007497 ORTHO05D009706 7.1e-199 697.6 501 67.1
Glyma.20G249400 Glycine max HOM05D007497 ORTHO05D009706 6.0e-198 694.5 493 67.3
TPR.G8894 Trifolium pratense HOM05D007497 ORTHO05D009706 1.0e-197 693.7 493 68.0
VMungo0720G2254 Vigna mungo HOM05D007497 ORTHO05D009706 1.0e-197 693.7 499 66.5
Migut.K01014 Erythranthe guttata HOM05D007497 ORTHO05D009706 1.3e-197 693.3 495 67.5
Aqoxy5G03252 Aquilegia oxysepala HOM05D007497 ORTHO05D009706 2.3e-197 692.6 494 69.0
DCAR_024649 Daucus carota HOM05D007497 ORTHO05D009706 1.9e-196 689.5 501 67.7
Peaxi162Scf00255g00215 Petunia axillaris HOM05D007497 ORTHO05D009706 3.4e-193 678.7 496 68.5
Zm00001eb133110 Zea mays HOM05D007497 ORTHO05D009706 1.9e-191 672.9 503 66.8
unitig_747.g21120 Utricularia gibba HOM05D007497 ORTHO05D009706 1.7e-189 666.4 531 61.8
SEGI_22503 Sequoiadendron giganteum HOM05D007497 ORTHO05D009706 1.1e-188 663.7 498 65.3
Oeu058905.2 Olea europaea HOM05D007497 ORTHO05D009706 8.1e-187 657.5 576 58.3
Actinidia25110 Actinidia chinensis HOM05D007497 ORTHO05D009706 5.8e-185 651.4 502 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3575 Anthoceros agrestis HOM05D007497 ORTHO05D009706 4.2e-183 645.2 492 64.4
Mapoly0028s0122 Marchantia polymorpha HOM05D007497 ORTHO05D009706 9.3e-183 644.0 492 64.0
arahy.Tifrunner.gnm1.ann1.03F5C5 Arachis hypogaea HOM05D007497 ORTHO05D009706 7.9e-182 641.0 432 72.0
Nitab4.5_0004878g0020 Nicotiana tabacum HOM05D007497 ORTHO05D009706 7.9e-182 641.0 496 64.5
MELO3C017750.2 Cucumis melo HOM05D007497 ORTHO05D009706 5.1e-181 638.3 423 74.5
Nitab4.5_0001771g0110 Nicotiana tabacum HOM05D007497 ORTHO05D009706 5.6e-180 634.8 503 63.0
SMO164G0003 Selaginella moellendorffii HOM05D007497 ORTHO05D009706 4.0e-178 628.6 489 61.8
Pp3c11_11180 Physcomitrium patens HOM05D007497 ORTHO05D009706 5.3e-178 628.2 503 62.6
Gohir.A01G021900 Gossypium hirsutum HOM05D007497 ORTHO05D009706 9.3e-175 617.5 414 73.4
Sc04g0010370 Simmondsia chinensis HOM05D007497 ORTHO05D009706 7.9e-174 614.4 501 62.9
Ca_11429_v3 Cicer arietinum L. HOM05D007497 ORTHO05D009706 3.9e-173 612.1 432 68.8
Ca_29861_v3 Cicer arietinum L. HOM05D007497 ORTHO05D009706 3.9e-173 612.1 432 68.8
MSTRG.8029 Avicennia marina HOM05D007497 ORTHO05D009706 1.6e-171 606.7 440 66.8
AUR62028889 Chenopodium quinoa HOM05D007497 ORTHO05D009706 2.1e-171 606.3 451 66.5
Rhsim12G0023000 Rhododendron simsii HOM05D007497 ORTHO05D009706 2.5e-167 592.8 503 61.0
ClCG07G015350 Citrullus lanatus HOM05D007497 ORTHO05D009706 2.5e-164 582.8 522 58.8
HPP92_024455 Vanilla planifolia HOM05D007497 ORTHO05D009706 1.1e-162 577.4 456 64.9
SGA_v2.0_scaffold228G43249 Striga asiatica HOM05D007497 ORTHO05D009706 1.0e-160 570.9 496 57.3
Cc11_g17320 Coffea canephora HOM05D007497 ORTHO05D009706 9.3e-159 564.3 395 71.1
EL10Ac6g13550 Beta vulgaris HOM05D007497 ORTHO05D009706 1.1e-156 557.4 502 57.4
Dinv11708 Davidia involucrata HOM05D007497 ORTHO05D009706 2.2e-152 543.1 333 77.2
Sopen01g005520 Solanum pennellii HOM05D007497 ORTHO05D009706 1.3e-147 527.3 363 71.6
SalBow2G2186 Salvia bowleyana HOM05D007497 ORTHO05D009706 5.2e-141 505.4 398 64.1
Actinidia30617 Actinidia chinensis HOM05D007497 ORTHO05D009706 2.1e-134 483.4 398 64.1
Solyc01g009940.1 Solanum lycopersicum HOM05D007497 ORTHO05D009706 6.8e-117 425.2 298 69.1
Potri.001G060300 Populus trichocarpa HOM05D007497 ORTHO05D009706 1.3e-99 367.9 231 75.3
Haze_12459 Corylus avellana HOM05D007497 ORTHO05D009706 3.0e-72 276.9 174 77.0
Pp3s30_430 Physcomitrium patens HOM05D007497 ORTHO05D009706 3.3e-63 246.9 476 30.7
MD10G1063400 Malus domestica HOM05D007497 ORTHO05D009706 2.4e-58 230.7 268 52.2
HanXRQChr12g0362241 Helianthus annuus HOM05D007497 ORTHO05D009706 9.3e-58 228.8 184 63.6
Prupe.4G226800 Prunus persica HOM05D007497 ORTHO05D009706 2.8e-54 217.2 189 62.4
SalBow2G3560 Salvia bowleyana HOM05D007497 ORTHO05D009706 7.7e-44 182.6 119 71.4
Cre16.g679150 Chlamydomonas reinhardtii HOM05D007497 ORTHO05D009706 3.7e-22 110.5 405 25.4
HPP92_024456 Vanilla planifolia HOM05D007497 ORTHO05D009706 4.8e-22 110.2 77 64.9
Cre03.g145267 Chlamydomonas reinhardtii HOM05D007497 ORTHO05D022249 1.6e-17 95.1 415 23.6
MD13G1123400 Malus domestica HOM05D007497 ORTHO05D009706 6.1e-17 93.2 58 79.3
Cfa026587 Carpinus fangiana HOM05D007497 ORTHO05D022249 1.7e-14 85.1 323 26.9
SEGI_36642 Sequoiadendron giganteum HOM05D007497 ORTHO05D022249 9.1e-13 79.3 430 22.8
MCO09G453 Micromonas commoda HOM05D007497 ORTHO05D009706 1.0e-11 75.9 482 23.0
arahy.Tifrunner.gnm1.ann1.X4TTMB Arachis hypogaea HOM05D007497 ORTHO05D015410 6.8e-08 63.2 60 48.3
Pp3c24_8280 Physcomitrium patens HOM05D007497 ORTHO05D022249 4.8e-06 57.0 432 21.1
Sc03g0005140 Simmondsia chinensis HOM05D007497 ORTHO05D009706 4.8e-06 57.0 36 75.0


User provided reference genes

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