Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.2e-133 479.9 254 100.0
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 2.9e-84 315.8 185 85.4
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.5e-48 197.2 156 60.3
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 8.3e-47 191.4 146 64.4
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 1.4e-46 190.7 183 52.5
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 9.2e-46 188.0 145 60.7
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.2e-45 187.6 146 62.3
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 4.6e-45 185.7 153 59.5
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.0e-44 184.5 158 58.2
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.3e-44 183.3 144 60.4
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 3.0e-44 183.0 148 59.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 6.6e-44 181.8 153 57.5
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.9e-43 180.3 142 60.6
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.3e-43 179.5 155 56.8
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 4.3e-43 179.1 145 58.6
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 4.3e-43 179.1 145 60.0
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 7.3e-43 178.3 147 57.8
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.6e-42 177.2 151 56.3
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 3.6e-42 176.0 145 60.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 6.8e-41 171.8 128 61.7
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.5e-40 170.6 144 55.6
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 2.6e-40 169.9 187 44.9
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.2e-39 166.8 147 57.8
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.2e-38 162.9 146 54.8
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.4e-38 162.2 146 54.8
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.2e-37 161.0 146 54.1
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 2.1e-37 160.2 156 50.0
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.5e-37 159.5 152 52.0
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.5e-37 159.5 152 52.0
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 4.6e-37 159.1 189 48.1
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.3e-36 157.5 187 45.5
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.3e-36 156.8 147 53.1
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.0e-36 156.4 151 48.3
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.9e-36 156.0 185 46.5
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.9e-36 156.0 188 44.1
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 5.1e-36 155.6 157 51.0
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.6e-36 155.2 185 44.3
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 6.6e-36 155.2 142 50.0
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 8.6e-36 154.8 151 49.0
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 8.6e-36 154.8 140 50.7
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.1e-35 154.5 181 45.3
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.5e-35 154.1 157 47.8
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.9e-35 153.7 162 50.6
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.9e-35 153.7 142 49.3
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.3e-35 152.5 188 42.6
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 4.3e-35 152.5 141 52.5
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 5.6e-35 152.1 149 49.0
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 7.3e-35 151.8 127 54.3
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 9.5e-35 151.4 141 50.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 9.5e-35 151.4 144 49.3
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 2.8e-34 149.8 149 49.0
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 8.1e-34 148.3 165 46.1
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 8.1e-34 148.3 183 44.3
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.8e-33 147.1 150 48.7
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.8e-33 147.1 165 46.1
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 3.1e-33 146.4 142 48.6
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.0e-33 146.0 165 46.7
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 4.0e-33 146.0 184 43.5
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 5.2e-33 145.6 183 44.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 8.9e-33 144.8 152 46.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.2e-32 144.4 183 42.1
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.5e-32 144.1 146 48.6
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.5e-32 144.1 152 46.7
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.0e-32 143.7 142 50.0
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.6e-32 143.3 167 44.3
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.4e-32 142.9 152 46.7
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 3.4e-32 142.9 185 43.8
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 4.4e-32 142.5 184 45.1
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 4.4e-32 142.5 183 41.0
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 7.6e-32 141.7 144 51.4
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.3e-31 141.0 183 42.6
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.3e-31 141.0 142 49.3
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-31 141.0 142 49.3
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.7e-31 140.6 151 47.0
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.9e-31 139.8 143 49.0
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 2.9e-31 139.8 184 41.8
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.8e-31 139.4 150 47.3
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.8e-31 139.4 150 47.3
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.8e-31 139.4 147 49.7
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 8.4e-31 138.3 144 42.4
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 8.4e-31 138.3 154 44.8
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.4e-30 137.5 148 45.9
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.9e-30 137.1 159 44.0
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.9e-30 137.1 107 57.0
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 5.4e-30 135.6 122 50.8
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 7.1e-30 135.2 183 40.4
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 2.1e-29 133.7 112 57.1
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.8e-29 131.7 142 47.2
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.0e-28 131.3 146 43.2
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.3e-28 131.0 183 37.2
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.3e-28 131.0 144 48.6
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.7e-28 130.6 185 36.8
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.7e-28 130.6 185 36.8
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 3.0e-28 129.8 142 41.5
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 3.0e-28 129.8 151 43.7
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 3.0e-28 129.8 191 39.3
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 5.1e-28 129.0 133 47.4
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.5e-27 127.5 153 39.9
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.9e-27 127.1 185 39.5
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 4.3e-27 125.9 151 43.7
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 4.3e-27 125.9 151 43.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 4.3e-27 125.9 186 40.9
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 4.3e-27 125.9 186 40.9
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 5.6e-27 125.6 150 45.3
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 7.3e-27 125.2 144 43.8
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-26 124.4 144 44.4
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.2e-26 124.4 144 44.4
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-26 124.4 144 44.4
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 1.2e-26 124.4 146 41.8
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.2e-26 124.4 183 43.7
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.6e-26 124.0 183 36.6
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.1e-26 123.6 147 42.2
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.6e-26 122.9 147 42.2
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.6e-26 122.9 142 42.3
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 6.2e-26 122.1 146 42.5
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 8.1e-26 121.7 144 42.4
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 8.1e-26 121.7 158 39.2
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 1.1e-25 121.3 185 39.5
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.4e-25 120.9 196 37.2
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.2e-24 117.9 166 43.4
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.5e-24 117.5 153 40.5
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.5e-24 117.5 148 42.6
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 3.4e-24 116.3 145 42.1
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 3.4e-24 116.3 145 42.1
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 5.8e-24 115.5 150 42.0
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 7.6e-24 115.2 146 41.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.7e-23 114.0 151 42.4
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.2e-23 113.6 189 36.0
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.8e-23 112.8 142 41.5
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.0e-20 104.8 159 35.2
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.0e-20 104.8 184 37.0
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 1.7e-20 104.0 150 39.3
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 5.1e-20 102.4 90 52.2
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 6.6e-20 102.1 150 38.7
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.1e-19 101.3 146 38.4
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.5e-19 100.1 150 38.7
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 3.6e-18 96.3 100 44.0
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 8.1e-18 95.1 150 37.3
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 8.1e-18 95.1 145 38.6
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.1e-17 93.2 105 44.8
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 9.0e-17 91.7 150 36.7
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 4.9e-15 85.9 146 34.2
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 6.4e-15 85.5 124 39.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.1e-13 80.5 118 37.3
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 1.8e-12 77.4 138 35.5
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 5.1e-12 75.9 147 34.7
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-11 74.7 150 34.0
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.3e-10 71.2 159 34.0
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.1e-10 70.5 140 32.1
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.2e-10 68.9 118 33.1
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 8.1e-10 68.6 100 39.0
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.9e-09 65.5 183 28.4
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.5e-08 64.3 90 35.6
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.5e-08 64.3 155 33.5
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.4e-08 63.2 176 30.7
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.5e-08 62.8 110 31.8
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 4.5e-08 62.8 99 35.4
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.3e-07 61.2 110 32.7
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.7e-07 60.8 127 36.2
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.7e-07 60.8 135 28.9
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 8.4e-07 58.5 145 32.4
FAN02G4025 Fragaria x ananassa HOM05D004153 ORTHO05D199077 3.2e-06 56.6 29 89.7
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 3.2e-06 56.6 137 26.3


User provided reference genes

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