Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.9e-46 188.7 90 100.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 4.7e-45 184.1 90 96.7
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.2e-42 175.3 90 88.9
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 3.6e-37 157.9 88 78.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.1e-36 156.4 85 80.0
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.4e-36 156.0 88 79.5
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 5.2e-36 154.1 91 78.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 8.9e-36 153.3 85 78.8
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 8.9e-36 153.3 91 75.8
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.2e-35 152.9 85 78.8
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.5e-35 152.5 90 76.7
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.5e-35 152.5 88 75.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.5e-35 152.5 88 76.1
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.6e-35 151.8 85 77.6
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 7.5e-35 150.2 88 76.1
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 9.8e-35 149.8 85 76.5
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.3e-34 149.4 90 75.6
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.3e-34 149.4 88 75.0
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.7e-34 149.1 88 75.0
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 76.9
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 74.7
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 3.7e-34 147.9 85 76.5
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 4.9e-34 147.5 88 73.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.4e-34 147.1 88 72.7
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 6.4e-34 147.1 87 74.7
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.4e-34 147.1 86 73.3
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 8.3e-34 146.7 84 76.2
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 8.3e-34 146.7 84 76.2
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 8.3e-34 146.7 88 75.0
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.1e-33 146.4 88 75.0
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 71.6
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 73.9
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.9e-33 145.6 85 72.9
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 4.1e-33 144.4 88 69.3
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 4.1e-33 144.4 87 70.1
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 5.4e-33 144.1 87 70.1
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.0e-33 143.7 88 72.7
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 9.2e-33 143.3 86 69.8
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 2.7e-32 141.7 84 73.8
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 3.5e-32 141.4 89 67.4
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 7.8e-32 140.2 88 70.5
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 1.0e-31 139.8 86 69.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 3.9e-31 137.9 85 70.6
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 3.9e-31 137.9 90 68.9
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 69.3
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 67.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 67.0
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 69.3
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 69.3
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 68.2
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.5e-30 136.0 86 72.1
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.5e-30 136.0 85 70.6
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 69.2
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.9e-30 135.6 88 65.9
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.5e-30 135.2 88 64.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 68.2
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 3.3e-30 134.8 87 69.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 68.2
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 69.3
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 68.2
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.6e-30 134.0 85 70.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 5.6e-30 134.0 87 69.0
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 7.3e-30 133.7 88 70.5
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 7.3e-30 133.7 88 70.5
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 9.5e-30 133.3 87 69.0
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 63.6
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.2e-29 132.9 85 72.9
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 67.0
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 67.0
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 67.0
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 67.0
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 67.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 2.1e-29 132.1 84 67.9
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 2.8e-29 131.7 88 65.9
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.8e-29 131.7 88 65.9
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 2.8e-29 131.7 88 69.3
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 2.8e-29 131.7 88 69.3
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 3.6e-29 131.3 88 64.8
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.6e-29 131.3 91 69.2
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.7e-29 131.0 84 67.9
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 6.2e-29 130.6 92 70.7
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 6.2e-29 130.6 84 65.5
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 8.1e-29 130.2 88 68.2
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.1e-28 129.8 84 67.9
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-28 129.4 88 65.9
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.8e-28 129.0 91 65.9
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 85 65.9
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 70.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 70.5
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 3.1e-28 128.3 87 65.5
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 62.5
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.2e-28 127.5 92 69.6
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 65.9
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 65.9
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 65.9
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 88 65.9
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 6.8e-28 127.1 82 70.7
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 8.9e-28 126.7 85 67.1
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.2e-27 126.3 91 64.8
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.5e-27 125.9 84 66.7
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 2.0e-27 125.6 91 67.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 87 60.9
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.6e-27 125.2 88 62.5
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 65.9
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 65.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 1.7e-26 122.5 81 63.0
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 4.9e-26 120.9 84 64.3
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 8.3e-26 120.2 88 67.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 85 64.7
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 79 67.1
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 79 67.1
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 85 64.7
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 85 64.7
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.4e-25 118.6 85 64.7
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.2e-24 116.3 85 63.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 6.0e-24 114.0 88 61.4
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.1e-23 110.9 62 77.4
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.6e-23 110.2 87 55.2
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.2e-21 106.3 66 69.7
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-19 99.8 83 56.6
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 8.4e-18 93.6 85 52.9
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 5.4e-17 90.9 81 49.4
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 9.2e-17 90.1 72 54.2
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.6e-16 89.4 54 70.4
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.0e-15 86.7 62 62.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 3.6e-13 78.2 58 62.1
FAN12G2758 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.6e-13 78.2 37 97.3
FAN17G0629 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.6e-13 78.2 37 97.3
FAN22G1974 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.6e-13 78.2 37 97.3
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 4.7e-13 77.8 78 48.7
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 8.1e-13 77.0 90 46.7
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-12 75.5 57 61.4
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.5e-11 72.8 83 37.3
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.4e-11 71.2 54 51.9
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.9e-10 68.6 79 43.0
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.9e-10 68.6 79 43.0
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 6.4e-10 67.4 64 51.6
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 4.2e-09 64.7 69 44.9
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 4.2e-09 64.7 69 44.9
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.2e-08 63.2 81 40.7
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 2.7e-08 62.0 41 58.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.8e-08 60.5 77 35.1
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.0e-07 60.1 83 34.9
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 6.6e-07 57.4 42 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.9e-06 55.8 66 40.9
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.5e-06 55.5 74 36.5
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 4.3e-06 54.7 79 34.2


User provided reference genes

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