Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 0.0e+00 1600.9 800 100.0
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 0.0e+00 1421.0 784 91.7
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 0.0e+00 1384.8 746 93.7
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 0.0e+00 1271.5 743 86.7
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 0.0e+00 1187.2 742 80.2
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 0.0e+00 1182.9 743 80.1
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 0.0e+00 1093.6 734 72.8
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 5.5e-312 1073.9 723 73.4
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.4e-310 1069.3 751 71.1
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 4.2e-310 1067.8 737 72.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 8.9e-305 1050.0 738 71.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 7.6e-304 1047.0 738 69.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 7.6e-304 1047.0 703 72.7
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 1.3e-300 1036.2 721 71.3
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 8.7e-300 1033.5 738 67.9
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.9e-299 1032.3 772 68.3
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 5.6e-299 1030.8 733 69.3
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 3.1e-297 1025.0 738 68.3
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.4e-296 1021.1 738 68.3
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.2e-293 1013.1 736 68.8
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 6.0e-293 1010.7 742 68.1
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.0e-292 1010.0 738 68.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 2.8e-290 1001.9 766 66.6
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 3.6e-290 1001.5 732 67.2
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 6.9e-289 997.3 729 66.8
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 6.9e-289 997.3 734 67.0
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.2e-288 996.5 739 66.7
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.6e-288 995.3 706 69.5
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 4.5e-288 994.6 710 69.3
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 2.9e-287 991.9 735 65.6
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 4.9e-287 991.1 735 65.3
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 6.4e-287 990.7 734 66.5
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 5.4e-286 987.6 707 69.4
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.6e-285 986.1 734 66.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 4.6e-285 984.6 733 66.0
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.9e-283 979.2 734 66.3
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 2.5e-283 978.8 734 65.9
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 2.5e-283 978.8 733 65.9
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.6e-282 976.1 735 64.9
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 6.2e-282 974.2 737 65.7
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 8.1e-282 973.8 774 63.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.1e-281 973.4 734 65.4
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 1.4e-281 973.0 689 69.4
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.2e-280 969.9 734 65.1
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.2e-280 969.9 736 65.4
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 2.0e-280 969.1 730 66.0
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.5e-280 968.0 734 65.0
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 4.5e-280 968.0 829 61.3
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 9.9e-280 966.8 734 65.0
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.3e-279 966.5 734 64.9
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.3e-279 966.5 734 64.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.9e-279 965.3 744 64.4
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 2.9e-279 965.3 733 65.3
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 3.8e-279 964.9 735 66.8
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 8.4e-279 963.8 729 65.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.4e-278 963.0 735 65.3
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.9e-278 962.6 734 64.6
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 4.2e-278 961.4 679 68.8
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 5.5e-278 961.1 712 67.8
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 6.0e-277 957.6 734 64.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 3.9e-276 954.9 737 63.9
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 8.7e-276 953.7 761 62.7
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 9.6e-275 950.3 637 73.6
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 1.5e-272 943.0 735 64.5
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.5e-272 943.0 736 65.5
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.0e-272 942.6 705 66.4
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 7.6e-272 940.6 730 63.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 3.8e-271 938.3 736 62.8
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.9e-270 936.0 705 66.1
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 7.1e-270 934.1 734 64.3
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.3e-267 924.9 763 62.4
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.8e-266 922.2 750 61.7
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.1e-265 918.7 750 61.6
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 2.3e-260 902.5 735 62.6
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 2.8e-258 895.6 728 63.0
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.5e-256 889.8 735 62.2
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 2.6e-256 889.0 690 65.2
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 8.5e-255 884.0 674 65.7
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.5e-248 863.2 767 60.2
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 3.2e-246 855.5 741 58.7
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 5.2e-244 848.2 695 59.9
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.2e-240 837.0 712 58.8
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 5.9e-240 834.7 1032 46.5
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 3.2e-238 828.9 704 61.2
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.3e-236 822.8 738 58.9
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 4.4e-235 818.5 640 65.3
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 6.3e-234 814.7 571 69.2
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.4e-233 812.8 574 71.1
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.7e-229 798.5 573 70.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.2e-224 783.9 662 61.6
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 7.7e-224 781.2 517 72.1
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.6e-221 772.3 567 66.3
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 4.1e-217 758.8 696 56.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.3e-207 727.2 696 55.5
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.7e-199 700.3 585 59.1
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 5.1e-191 672.2 641 55.1
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 6.4e-186 655.2 455 70.3
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.7e-175 620.5 676 47.5
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 2.4e-172 610.1 713 46.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.3e-157 561.2 391 71.1
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 7.2e-145 518.8 449 56.8
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.6e-144 516.5 414 62.1
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.0e-135 486.9 514 48.1
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.8e-133 480.3 393 61.1
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 5.5e-129 466.1 412 58.5
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 3.7e-117 426.8 325 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.1e-116 423.7 438 48.6
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.3e-111 407.5 275 70.5
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.4e-108 397.5 348 57.8
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.9e-101 373.2 308 60.1
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.5e-97 360.9 305 63.3
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 9.5e-97 359.0 766 34.6
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.6e-88 330.5 361 47.9
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 3.6e-88 330.5 239 66.1
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 5.2e-87 326.6 233 69.1
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.9e-73 281.6 428 39.5
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.6e-73 280.0 284 52.8
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 7.6e-70 269.6 652 31.7
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-68 264.6 407 36.6
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.2e-59 235.7 651 29.6
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 8.1e-48 196.4 355 39.7
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 6.5e-45 186.8 284 39.1
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 7.4e-41 173.3 116 74.1
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 6.5e-37 160.2 101 80.2
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.2e-35 156.0 111 72.1
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-34 151.4 240 39.2
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-34 151.4 162 50.0
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.7e-33 146.4 248 37.5
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.9e-31 140.2 289 35.3
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 2.2e-29 135.2 90 64.4
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.7e-24 119.0 150 46.7
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.0e-21 109.8 74 68.9
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 2.7e-19 101.7 67 79.1
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.4e-18 99.4 445 24.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 3.9e-18 97.8 178 41.0
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.1e-18 97.4 450 22.9
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.1e-18 97.4 88 50.0
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 5.7e-17 94.0 112 41.1
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.4e-15 88.6 53 71.7
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.1e-15 86.7 50 74.0
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.6e-14 85.9 55 65.5
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.0e-14 85.5 48 75.0
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.7e-13 82.4 115 39.1
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.2e-13 82.0 46 76.1
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.0e-13 80.9 52 67.3
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 7.5e-09 67.0 39 76.9
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 6.3e-08 63.9 247 28.7
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 2.7e-06 58.5 78 50.0


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